BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZD02FM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig698 1158 0.0
>3x_Contig698
Length = 2551
Score = 1158 bits (584), Expect = 0.0
Identities = 663/684 (96%), Gaps = 4/684 (0%)
Strand = Plus / Plus
Query: 87 atgtttggtcttctcatgtatgcagatgcaggctaggatcaacaagcaatcgcgatccat 146
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34 atgtttggtcttctcatgtatgcagatgcaggctaggatcaacaagcaatcgcgatccag 93
Query: 147 gcacccgttacataccaatcgtcaattaaaaagcgagcgactaagtgataagttgtatgc 206
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 94 gcacccgttacataccaatcgtcaattaaacagcgagcgactaagtgataagttgtatgc 153
Query: 207 gtgatcccatttttttctattaaacttctgcgtattggcactttagaatcatattctgtt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 gtgatcccatttttttctattaaacttctgcgtattggcactttagaatcatattctgtt 213
Query: 267 gaaaagggaagctgagataagttcagacgcatatacagttagataatggattccagtttc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 gaaaagggaagctgagataagttcagacgcatatacagttagataatggattccagtttc 273
Query: 327 ggaacaaatgggttctatacacatactccatcgatgtggagtgatagtaggcgtaggaac 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ggaacaaatgggttctatacacatactccatcgatgtggagtgatagtaggcgtaggaac 333
Query: 387 gttggaaatagagataaagactcgtt-cagaggaggaataagcgatcgaagaaatgaaga 445
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 334 gttggaaatagagataaagactcgttacagaggaggaataagcgatcgaagaaatgaaga 393
Query: 446 gatcaacaaaccaaaagaagatccattttgtatatccggtttttccaattacacaggaaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 gatcaacaaaccaaaagaagatccattttgtatatccggtttttccaattacacaggaaa 453
Query: 506 atcgaagtcaagcactagtagagcatagaatggcccagcgagtgaatcgattaaggagct 565
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 454 atcgaagtcaagcactagtagagcaaagaatggcccagcgagtgaatcgattaaggagct 513
Query: 566 acctttgatttctactgaagttctcgatgcagccagtcagagaagattatccttcgtcgt 625
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 514 acctttgatttctactgaagttctcgatgcagccagtcagagaagattagccttcgtcgt 573
Query: 626 tttttttatcattcaatgcttcaaactatacgatctaattctacttaagagtgggattcc 685
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||
Sbjct: 574 tttttttatcattcaatgctacaaactatacgatctaatcctacttaagagtgggatacc 633
Query: 686 attatctggggatttttctatccgattcaaggtttaactttcttttcaaaattttgggaa 745
|||||||||| ||||||||||| |||||||||| ||||| | ||||||||| || || |
Sbjct: 634 attatctggg-atttttctatcgaattcaaggttaaactt-catttcaaaatatttggta 691
Query: 746 tttgacccttttgttcttttactg 769
| ||| |||| ||||||||||||
Sbjct: 692 atagactcttt-gttcttttactg 714
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7886
Number of Sequences: 1807
Number of extensions: 7886
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)