BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZD02RM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1629 1362 0.0
>3x_Contig1629
Length = 12481
Score = 1362 bits (687), Expect = 0.0
Identities = 809/841 (96%), Gaps = 7/841 (0%)
Strand = Plus / Minus
Query: 51 gcttccaagaaagacccacagaggtttgagaaaggttgcttgtatcggtgcttggcatcc 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9613 gcttccaagaaagacccacagaggtttgagaaaggttgcttgtatcggtgcttggcatcc 9554
Query: 111 agcccacgttatgtggtccgttgctagagctggtcaaagaggttaccaccacagaacctc 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9553 agcccacgttatgtggtccgttgctagagctggtcaaagaggttaccaccacagaacctc 9494
Query: 171 tattaaccacaaggtctacagagttggtaagggtgacgacgaagctaacgccgctaccga 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9493 tattaaccacaaggtctacagagttggtaagggtgacgacgaagctaacgccgctaccga 9434
Query: 231 attcgacagaaccaagaagaccatcaccccaatgggtggtttcgtccactacggtgctat 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9433 attcgacagaaccaagaagaccatcaccccaatgggtggtttcgtccactacggtgctat 9374
Query: 291 caacaatgatttcgttatcttgaagggttctatcccaggtaccagaaagagagttgttac 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9373 caacaatgatttcgttatcttgaagggttctatcccaggtaccagaaagagagttgttac 9314
Query: 351 tttaagaaagtccttgtacaccaacacctccagaaaggccttggaagaagttaccttgaa 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9313 tttaagaaagtccttgtacaccaacacctccagaaaggccttggaagaagttaccttgaa 9254
Query: 411 gtggatcgacactgcttctaagttcggtaagggtagattccaaaccccagctgaaaagca 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9253 gtggatcgacactgcttctaagttcggtaagggtagattccaaaccccagctgaaaagca 9194
Query: 471 cgctttcttgggtactttgaagaaggacttataaactcctcaactctaatagagtcgaat 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9193 cgctttcttgggtactttgaagaaggacttataaactcctcaactctaatagagtcgaat 9134
Query: 531 tgagtaaaaagctttgcatgctgtaattttatagactagttttggagtactcaagatagt 590
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 9133 tgagtaaaaagctttgcatgctgtaattttatagactagttttggagtactcaagaaagt 9074
Query: 591 gtttacactttctttcactatcccatcggctggttcataatatttcctgttgntttgacc 650
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 9073 gtttacactttctttcactatcccatcggctggttcataatatttcctgttgttttgaca 9014
Query: 651 actatcttttaatatgaaaatattagcattttgaataatta-taattacacgcgcctcnc 709
||||||||| ||||||||||||||||||||| |||||| || ||||||||||||| ||
Sbjct: 9013 actatctttaaatatgaaaatattagcattt-gaataaataataattacacgcgcttcct 8955
Query: 710 tcttggcagttattttttctggagaagcactgaagagcctccgcggtccttatcaacgct 769
||||| ||||| ||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 8954 tcttgcaagtta-tttttctggagaagcactgaagagcctccgcggtcttcatcaacgct 8896
Query: 770 ttctttttcttgctctttttacgatgattggaggactggttccttcacatgtcactacat 829
||| || ||||||||||||| |||||||||||| |||| ||||| ||||||||||||||
Sbjct: 8895 ttc-ttctcttgctctttttccgatgattggagtactgtttcctacacatgtcactacaa 8837
Query: 830 aacattttttaattggttttggggtgcggctgattattcctacaccaggggtaagggaac 889
||| ||| | ||||| ||| |||||||||||| || ||||||| ||||||||| |||||
Sbjct: 8836 aaccatttctcattgggttt-gggtgcggctga-taatcctaca-caggggtaatggaac 8780
Query: 890 c 890
|
Sbjct: 8779 c 8779
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6425
Number of Sequences: 1807
Number of extensions: 6425
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)