BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZD03FM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1441 878 0.0
>3x_Contig1441
Length = 8574
Score = 878 bits (443), Expect = 0.0
Identities = 455/458 (99%), Gaps = 1/458 (0%)
Strand = Plus / Plus
Query: 84 caggtttatgatatttatattgatgctagtttaagtcagttatgttggggagcactttta 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8118 caggtttatgatatttatattgatgctagtttaagtcagttatgttggggagcactttta 8177
Query: 144 gtatttccgaaatctagattgttaagaagttatcttgaagggtggtgtatgttccaagtt 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8178 gtatttccgaaatctagattgttaagaagttatcttgaagggtggtgtatgttccaagtt 8237
Query: 204 aaaaatagtgtgaatgtttttaaagtgcttatccggttatttgatatgtgttttgctgaa 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8238 aaaaatagtgtgaatgtttttaaagtgcttatccggttatttgatatgtgttttgctgaa 8297
Query: 264 tacatgagtttaatgtattatcgtggtagagaggaacatatatttttggatgataatttt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8298 tacatgagtttaatgtattatcgtggtagagaggaacatatatttttggatgataatttt 8357
Query: 324 ttgtttgaggaagagcaagatattagtgttggatgtttccaagagtcagctgttaaagaa 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8358 ttgtttgaggaagagcaagatattagtgttggatgtttccaagagtcagctgttaaagaa 8417
Query: 384 agtgtgggatccttcagtagacagtttattgttgaattaatgtctggatgtgttaaattg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8418 agtgtgggatccttcagtagacagtttattgttgaattaatgtctggatgtgttaaattg 8477
Query: 444 ttggtgggatctaaaaaagctttggagttgttgccagatatgtctgctataattaaagtc 503
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 8478 ttggtgggatctaaaaaagctntggagttgttgccagaaatgtctgctataattaaagtc 8537
Query: 504 tgttttttttgttgttcttctgaagttgcatggttaca 541
||||||||||||||||||||||||| ||||||||||||
Sbjct: 8538 tgttttttttgttgttcttctgaag-tgcatggttaca 8574
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,732
Number of Sequences: 1807
Number of extensions: 14732
Number of successful extensions: 113
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)