BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZD03RM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1615 995 0.0
>3x_Contig1615
Length = 14844
Score = 995 bits (502), Expect = 0.0
Identities = 595/616 (96%), Gaps = 8/616 (1%)
Strand = Plus / Plus
Query: 47 gatctgtgttttgtctgccgttcttcagtataagtactaattgactcttcctgtcatatc 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8057 gatctgtgttttgtctgccgttcttcagtataagtactaattgactcttcctgtcatatc 8116
Query: 107 caagtaatgatatcttaccagtatcattttcattggcaacggaggtggctgtttctttta 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8117 caagtaatgatatcttaccagtatcattttcattggcaacggaggtggctgtttctttta 8176
Query: 167 gatttgcataatcagccaatccgaactgccttctccatagtaacgtgttatgcaaccttc 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8177 gatttgcataatcagccaatccgaactgccttctccatagtaacgtgttatgcaaccttc 8236
Query: 227 taatagtttgttcagcattccaagcggttgccctcagatatctcatgatacactccctcg 286
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 8237 taatagtttgttcagcattccaagcggttgccctcagatatctcaggatacactccctcg 8296
Query: 287 aaagccagaatttctcccagtctcctaacgttgaatagttatttgagtcctgtagatctt 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8297 aaagccagaatttctcccagtctcctaacgttgaatagttatttgagtcctgtagatctt 8356
Query: 347 ccgcatgtccatttacaggcaaacgcaactgcggatcactgaagtgttgcagtacagcat 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8357 ccgcatgtccatttacaggcaaacgcaactgcggatcactgaagtgttgcagtacagcat 8416
Query: 407 ggtatatcacttgttgctcattgtctaactctggttgtcgatgcggttttgtatatcgca 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8417 ggtatatcacttgttgctcattgtctaactctggttgtcgatgcggttttgtatatcgca 8476
Query: 467 gtggtggatcagatatgaacgtatcacatggaattagatctgcaagttgtctgattaagt 526
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 8477 gtggtggatcagaaatgaacgtatcacatggaattagatctgcaggttgtctgattaggt 8536
Query: 527 catttccctttcgctggaataccccca-tgna-tggntatgtatctgccaa-ttggatgt 583
||||||||||||||||||||| || || || | || |||||||||| ||| ||| ||||
Sbjct: 8537 catttccctttcgctggaataacctcattgtattgtttatgtatctgtcaagttgaatgt 8596
Query: 584 accagat-ctagatcttgaaaagcacgggc-acag-acccacagcttattg-actatttt 639
||||||| |||||||||||||||||||||| |||| ||| ||||||||||| ||||||||
Sbjct: 8597 accagatactagatcttgaaaagcacgggcaacagaaccaacagcttattgaactatttt 8656
Query: 640 t-aatgaagatttaat 654
| ||||| ||||||||
Sbjct: 8657 taaatgatgatttaat 8672
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7346
Number of Sequences: 1807
Number of extensions: 7346
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)