BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZD04FM1.SCF screened BAC_end
(987 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1544 1057 0.0
>3x_Contig1544
Length = 10626
Score = 1057 bits (533), Expect = 0.0
Identities = 631/660 (95%), Gaps = 3/660 (0%)
Strand = Plus / Plus
Query: 87 ccaaatacccatcgtcaaatgtagaactctttgcagtggtgaaggtcccagtgtcgttag 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9718 ccaaatacccatcgtcaaatgtagaactctttgcagtggtgaaggtcccagtgtcgttag 9777
Query: 147 agttaaaagtatagtacaagaccaaagatgtatcgttatcaactttactaggccgttcac 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9778 agttaaaagtatagtacaagaccaaagatgtatcgttatcaactttactaggccgttcac 9837
Query: 207 agatatttgcacttaaaaagatgaacatctcatatgtctgtagtaattgtgagaaagaat 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9838 agatatttgcacttaaaaagatgaacatctcatatgtctgtagtaattgtgagaaagaat 9897
Query: 267 ctgtattgttgatagaaaattcgaaatatgatttctgaccctttactagtgaagctgaaa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9898 ctgtattgttgatagaaaattcgaaatatgatttctgaccctttactagtgaagctgaaa 9957
Query: 327 caggtgcccattcttgcaatgaagcagaatcagaactgttatcattgccagtgacggtat 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9958 caggtgcccattcttgcaatgaagcagaatcagaactgttatcattgccagtgacggtat 10017
Query: 387 cactggccatcaggttctcatcgagaaacaaatcaaagcagcatcacggaaccgcaaaaa 446
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 10018 cactggccatcaggttctcatcgagaaacaaatcaaagcagcaacacggaaccgcaaaaa 10077
Query: 447 ccgtcagtaacaagtaacatacatatctccatagcatgatagtgcagttaccagtgatca 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10078 ccgtcagtaacaagtaacatacatatctccatagcatgatagtgcagttaccagtgatca 10137
Query: 507 gagtacaattactctgctacttacggatctctccctttattcatagagcatgcngttgaa 566
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 10138 gagtacaattactctgctacttacggatctctccctttattcaaagagcatgcgtttgaa 10197
Query: 567 ccttatat-ttgaattacgacttggttcatttttttttttttcctttaacattgatgaaa 625
|||||||| | ||||||||||||| | ||||||||||| || | ||||||||||||||||
Sbjct: 10198 ccttatatatagaattacgacttgttccatttttttttcttccatttaacattgatgaaa 10257
Query: 626 gatgtatttcagcattcaccaaatgaaagattttttgatgggagtaaagaggtccacaag 685
|||| || ||||| ||| || ||||||| ||||||||||||||||||||||||||||
Sbjct: 10258 gatgagttcgagcatacacaaatagaaagatattttgatgggagtaaagaggtccacaag 10317
Query: 686 ggttgaaacagcttttcccacattccattgactggatcagtttttagtaccagtccattt 745
||| ||||||||| | ||||||| | ||||||| |||||| | |||||||||||| ||||
Sbjct: 10318 ggtcgaaacagctctacccacatccaattgact-gatcag-tattagtaccagtcgattt 10375
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,452
Number of Sequences: 1807
Number of extensions: 14452
Number of successful extensions: 159
Number of sequences better than 1.0e-20: 1
length of query: 987
length of database: 10,358,551
effective HSP length: 16
effective length of query: 971
effective length of database: 10,329,639
effective search space: 10030079469
effective search space used: 10030079469
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)