BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZD04RM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1580 1320 0.0
>3x_Contig1580
Length = 11743
Score = 1320 bits (666), Expect = 0.0
Identities = 701/710 (98%), Gaps = 2/710 (0%)
Strand = Plus / Plus
Query: 46 ctttgggagttgtagaatgccatttcctcctcccttattggaagaagcaaggcaaagaat 105
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 5570 ctttgggagttgtagaatgccagttcctcctcccttattggaagaagcaaggcaaagaat 5629
Query: 106 ttcaatttcgaaatttttttcgaatgaagggcataagagagctgctttaaaaggctattt 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5630 ttcaatttcgaaatttttttcgaatgaagggcataagagagctgctttaaaaggctattt 5689
Query: 166 tggtactgtcaacggccctacgaaacctaatgtttcagatgataaatgtgtaacatcata 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 5690 tggtactgtcaacggccctacgaaacctaatgtttcagatgataaatgtgtaacaaca-a 5748
Query: 226 tgagattatttacacccccaccatctttagatctgaatacaaatgattcgtctacccgtc 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5749 tgagattatttacacccccaccatctttagatctgaatacaaatgattcgtctacccgtc 5808
Query: 286 attggactatgaatgaaaatgaaatcgttgagtataagccatttgtaccaccaaagtccg 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5809 attggactatgaatgaaaatgaaatcgttgagtataagccatttgtaccaccaaagtccg 5868
Query: 346 aaactggcagtaggttttcagtgtcttatccgtattcttcactttcaccaaagaaacatt 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5869 aaactggcagtaggttttcagtgtcttatccgtattcttcactttcaccaaagaaacatt 5928
Query: 406 taagtaagagacttagaagcaaaagaagttcaacaaacggtaaaaagaattttttctctc 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5929 taagtaagagacttagaagcaaaagaagttcaacaaacggtaaaaagaattttttctctc 5988
Query: 466 agcaaactaccaataacatctctgatcattcaccagttgttactgcgacacttgagtctg 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5989 agcaaactaccaataacatctctgatcattcaccagttgttactgcgacacttgagtctg 6048
Query: 526 agaacaaacaagatccatcttggttgaaaaggactttatcaagtgcaagttccaagtttg 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6049 agaacaaacaagatccatcttggttgaaaaggactttatcaagtgcaagttccaagtttg 6108
Query: 586 aaaacatattgaattcgagctcaaaa-caaggggccaagacgtggggaattattcaatat 644
||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 6109 aaaacatattgaaatcgagctcaaaatcaaggggccaagacgtggggaatatttcaatat 6168
Query: 645 gccatgctagtacttactacaacaatggcggagatgaggaagaatcatttgttttcaatc 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6169 gccatgctagtacttactacaacaatggcggagatgaggaagaatcatttgttttcaatc 6228
Query: 705 ccaataaaactactgccattgatgaaaaattcatcatggcctctgaaaac 754
|||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 6229 ccaataaaactactgccattgatgaaaaattcatcaatgcctctgaaaac 6278
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8767
Number of Sequences: 1807
Number of extensions: 8767
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)