BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZD05FM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1486 1269 0.0
>3x_Contig1486
Length = 12131
Score = 1269 bits (640), Expect = 0.0
Identities = 687/703 (97%)
Strand = Plus / Minus
Query: 85 taacacttgagggcacccattcatcgtcatcaatggacttaaaaccaaattgttccgagg 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9373 taacacttgagggcacccattcatcgtcatcaatggacttaaaaccaaattgttccgagg 9314
Query: 145 tctcgaaatactggaacaaatagttagattcacctcccataacggtcaattttgatttct 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9313 tctcgaaatactggaacaaatagttagattcacctcccataacggtcaattttgatttct 9254
Query: 205 gttccaacgactttgacttatcggagaacaacgcaaagcatagtccatacagacgttcct 264
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9253 gttccaacgacattgacttatcggagaacaacgcaaagcatagtccatacagacgttcct 9194
Query: 265 tgtatttatctgggtcatcatacccggcggcagtgacaacaccaacgttgatcccacgtt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9193 tgtatttatctgggtcatcatacccggcggcagtgacaacaccaacgttgatcccacgtt 9134
Query: 325 tcaacaacgtgataatccttgtaacgattttaccacctctttcaatggatcccccatcct 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9133 tcaacaacgtgataatccttgtaacgattttaccacctctttcaatggatcccccatcct 9074
Query: 385 catatagcgtaacgtcaccatcaaaagtgaccaatttcaattctttcgatttgagtaagg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9073 catatagcgtaacgtcaccatcaaaagtgaccaatttcaattctttcgatttgagtaagg 9014
Query: 445 ccaaaatctgggcagagtttaaaatgtgtctgatatcattaaaggacggagaaaccattt 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9013 ccaaaatctgggcagagtttaaaatgtgtctgatatcattaaaggacggagaaaccattt 8954
Query: 505 ttctgctacatatagcacgtcttctgttntgaacttcgaaagcttccaccaaaggtaaat 564
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 8953 ttctgctacatatagcacgtcttctgttttgaacttcgaaagcttccaccaagggtaaat 8894
Query: 565 gggtgataaacgtttcaacttgtggaactagttgatctagccttgcttcttctagagatc 624
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8893 gggtgaaaaacgttccaacttgtggaactagttgatctagccttgcttcttctagagatc 8834
Query: 625 ccaactgcctacgcctgttctggatttcattctttttggaaacccaattttcaatatcgc 684
||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||
Sbjct: 8833 ccaactgcctacgcctgttctggatttcaatcttttgggaaaccaaattttcaatatcgc 8774
Query: 685 tgaatttgcttcagtactgcttataggtcctttcagcaactgaatctgttcccgctggca 744
||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 8773 tgaatatgctacagtactgcttataggtcctttcagcacctgaatctgttcccgcttgca 8714
Query: 745 acacgaagggacccgccaaccaccctttaatccattccataaa 787
|||||||||| |||||||| |||||||||||||||| |||||
Sbjct: 8713 acacgaagggcaccgccaacaaccctttaatccattcgataaa 8671
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6544
Number of Sequences: 1807
Number of extensions: 6544
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)