BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZD05RM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1592 1158 0.0
>3x_Contig1592
Length = 12307
Score = 1158 bits (584), Expect = 0.0
Identities = 694/720 (96%), Gaps = 8/720 (1%)
Strand = Plus / Minus
Query: 48 gctttgattaatgaggaaccgtttatgcctctctgtcatgatcctgcagccaatgctggg 107
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 3137 gctttgattaatgaggaaccgtcgatgcctctctgtcatgatcctgcagccaatgctggg 3078
Query: 108 gcttcggtttccgaaaccgataagctgtcaaatcaagaagaaatagtacaggatattatt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3077 gcttcggtttccgaaaccgataagctgtcaaatcaagaagaaatagtacaggatattatt 3018
Query: 168 ccttctaatgacggtaaacttttgaagtgttccgaagtctgggatcgtattactgcacat 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3017 ccttctaatgacggtaaacttttgaagtgttccgaagtctgggatcgtattactgcacat 2958
Query: 228 ccacgttactcggacctagatatcgatggtctatgtttggagctacggacaaaggctaaa 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2957 ccacgttactcggacctagatatcgatggtctatgtttggagctacggacaaaggctaaa 2898
Query: 288 tgttcggaaaaaggtgtcgttgtcaatgcggaggatgttcaaaaggctttgatttcgcat 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2897 tgttcggaaaaaggtgtcgttgtcaatgcggaggatgttcaaaaggctttgatttcgcat 2838
Query: 348 atgcaatgaataatcatttcacttggtttcgcaccacaatactgttacgttcaaattaac 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2837 atgcaatgaataatcatttcacttggtttcgcaccacaatactgttacgttcaaattaac 2778
Query: 408 ggtttcaattcttttaacgagtttccgatgtctttctttttgaagtagaggacatatctt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2777 ggtttcaattcttttaacgagtttccgatgtctttctttttgaagtagaggacatatctt 2718
Query: 468 tttcgaatggataattacgaactcctcattcctgaagaaacttatattacatggatcacg 527
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 2717 tttcgaatggataattacgaactcctcattcctgaagaaacttaaattacatggatcacg 2658
Query: 528 aataccaagaccaaattaccaaattttcagtcttaaaagacttaataaaactttcagaaa 587
||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2657 aatacaaagacaaaataaccaaattttcagtcttaaaagacttaataaaactttcagaat 2598
Query: 588 tatccctcttatattgagcatgttcgaaccctttttctttgtcctccttttatcatcgat 647
||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||
Sbjct: 2597 tatccctcttatattgagcatgttcgaacttttttcttttgtctcccttttatcatcgat 2538
Query: 648 cattaaaacgcttattctactttgggttttttccttttacaattaaggtttttcaaccca 707
|| |||||||||||||||||||| |||||||||||||||| | ||| ||||||||| |||
Sbjct: 2537 caataaaacgcttattctacttt-ggttttttccttttacta-taatgtttttcaa-cca 2481
Query: 708 tttttcacttttcaaattttttttacacctaccttttccttgtttaaattccatcctccc 767
||||||| ||||||| |||||||||| ||||||||| ||||| |||| |||||||||||
Sbjct: 2480 attttcac-tttcaaa-tttttttaca-ctacctttt-cttgtataaa-tccatcctccc 2426
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,011
Number of Sequences: 1807
Number of extensions: 10011
Number of successful extensions: 93
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)