BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZD06FM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig845 995 0.0
>3x_Contig845
Length = 3389
Score = 995 bits (502), Expect = 0.0
Identities = 583/606 (96%), Gaps = 3/606 (0%)
Strand = Plus / Minus
Query: 149 tgctgatgttgagaaagaacttgaggtaattgagtagctgagccatgtagtggacccaat 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3389 tgctgatgttgagaaagaacttgaggtaattgagtagctgagccatgtagtggacccaat 3330
Query: 209 cctgttggagttgtatggtcagatagtactgtgtaaggaactttagcagggataggtttg 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3329 cctgttggagttgtatggtcagatagtactgtgtaaggaactttagcagggataggtttg 3270
Query: 269 attatgttgacgggagtctggggaccattgattacaaagttaccttgcgcttcaatcgcg 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3269 attatgttgacgggagtctggggaccattgattacaaagttaccttgcgcttcaatcgcg 3210
Query: 329 agtccatattccgatggtactgagctatgaccgggggttgaattaataggagtgttagaa 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3209 agtccatattccgatggtactgagctatgaccgggggttgaattaataggagtgttagaa 3150
Query: 389 tacaattgagaaccactgaagttggaaacaggtacggttccgtaagggtaatatggtttg 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3149 tacaattgagaaccactgaagttggaaacaggtacggttccgtaagggtaatatggtttg 3090
Query: 449 tatgaaattacattaggctgagatgaaccttgagcaatagtaaatgcttgttgggggttt 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3089 tatgaaattacattaggctgagatgaaccttgagcaatagtaaatgcttgttgggggttt 3030
Query: 509 tgattcgcctgcaactgttgatgttgctgttgatgttgttgctgatgggggttgatgctg 568
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 3029 tgattcgcctgcaactgttgatgttgctgttgatgttgttgctgat-ggggttgttgctg 2971
Query: 569 ctgctgttgttgttgctgctgctgagattgctgctgagattgctgctggggttgctgctg 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2970 ctgctgttgttgttgctgctgctgagattgctgctgagattgctgctggggttgctgctg 2911
Query: 629 gggctgaaattg-atttgcgcctgcattggcttgtggggaggatccagtgccaaa-gatt 686
|||||| ||||| || |||||||||| ||||| ||||||||| | |||||||| |||
Sbjct: 2910 gggctgtaattgaatctgcgcctgcagtggctgttggggaggagcaggtgccaaaggatc 2851
Query: 687 cctgaggacacttattttccttttttttgaagagcccgtaaaagatttttttcttttaaa 746
| |||||||||| || | |||||| ||||||||||| ||| ||||| || |||||| |||
Sbjct: 2850 catgaggacactcatatgccttttctttgaagagccagtagaagatattcttctttcaaa 2791
Query: 747 agggtt 752
||||||
Sbjct: 2790 agggtt 2785
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8678
Number of Sequences: 1807
Number of extensions: 8678
Number of successful extensions: 372
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)