BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZD06RM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1507 1203 0.0
>3x_Contig1507
Length = 11359
Score = 1203 bits (607), Expect = 0.0
Identities = 640/650 (98%), Gaps = 1/650 (0%)
Strand = Plus / Plus
Query: 39 cttattgttctgaatgtttcaaatgttgcaaatgtggtgaaaaaattaacgatcttaggt 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7558 cttattgttctgaatgtttcaaatgttgcaaatgtggtgaaaaaattaacgatcttaggt 7617
Query: 99 atgcaaagacaaagaaagggttattctgtataacttgtcatgaacgacttttagccagga 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7618 atgcaaagacaaagaaagggttattctgtataacttgtcatgaacgacttttagccagga 7677
Query: 159 agaagtaccatgaggagaagaagcgaagactaaagaaacagttgccgatcgttccatcgt 218
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7678 agaagtaccatgaggagaagaagcgaagactaaagaaacagttgccgatcgttccatcgc 7737
Query: 219 ccaaattaccagactcctcttcttcacttgacccgcagaagatggagttcagcagcgtgg 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7738 ccaaattaccagactcctcttcttcacttgacccgcagaagatggagttcagcagcgtgg 7797
Query: 279 agactgcgaataatagtaatttgaactcgagcttagatccggggctcgaactcacgccag 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7798 agactgcgaataatagtaatttgaactcgagcttagatccggggctcgaactcacgccag 7857
Query: 339 atagcaacccttattccgtagtttcatcaattgcaccggataggtctagttcacgacctg 398
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7858 aaagcaacccttattccgtagtttcatcaattgcaccggataggtctagttcacgacctg 7917
Query: 399 caactgcagagttgttgcagcataaccaccagcatgcagataataattacagtgaggatg 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7918 caactgcagagttgttgcagcataaccaccagcatgcagataataattacagtgaggatg 7977
Query: 459 taataaaccaactgaaccaatcaccctctccacctccacaaaagtccattaccgctccaa 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7978 taataaaccaactgaaccaatcaccctctccacctccacaaaagtccattaccgctccaa 8037
Query: 519 tagatttctcanagaatgatgctatagttaagtcaagctcgaatagtgtcattgcacaat 578
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8038 tagatttctcaaagaaggatgctatagttaagtcaagctcgaatagtgtcattgcacaat 8097
Query: 579 tcttagatgatgagtaccatgatgacgacggttatgtatcaattttcacacaacacaagg 638
|||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 8098 tcttagatgatgagtaccatgatgacgacggtaatgtatcaatttcaacacaacacaagg 8157
Query: 639 attcacatttagataaaat-ttacagaacacgttggacatttctgaggag 687
||||||| ||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 8158 attcacaattagataaaatcttacagaacacgttggacaattctgaggag 8207
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6453
Number of Sequences: 1807
Number of extensions: 6453
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)