BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZD07RM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig581 1348 0.0
>3x_Contig581
Length = 1616
Score = 1348 bits (680), Expect = 0.0
Identities = 757/773 (97%), Gaps = 8/773 (1%)
Strand = Plus / Minus
Query: 45 cttcagcacccatctctctaccgataccggattggccgaaaccaccgaatggaacatttt 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 cttcagcacccatctctctaccgataccggattggccgaaaccaccgaatggaacatttt 780
Query: 105 gatggaagttgttgtaggtgttaatccagacggtaccggccttaactctgttggaaacgt 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 gatggaagttgttgtaggtgttaatccagacggtaccggccttaactctgttggaaacgt 720
Query: 165 caatagccttgttaacatccttagtgtgaataccggcagcaagaccatattcagagtcgt 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 caatagccttgttaacatccttagtgtgaataccggcagcaagaccatattcagagtcgt 660
Query: 225 tagccttagcgacgacttcgtcaacggtagtgaacttagagactgttacaacaggaccaa 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 tagccttagcgacgacttcgtcaacggtagtgaacttagagactgttacaacaggaccaa 600
Query: 285 agatttcttccttaacaatttgcatgtcttctttaacatcagcaaagatagttggcttga 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 agatttcttccttaacaatttgcatgtcttctttaacatcagcaaagatagttggcttga 540
Query: 345 taaagtaacccttgttaccgattctttcaccaccagtgatgacacgagcaccttcagaag 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 taaagtaacccttgttaccgattctttcaccaccagtgatgacacgagcaccttcagaag 480
Query: 405 taccgacatcaacataggataagatcttgtcaatttgcatttgagaagtttgagcacctt 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 taccgacatcaacataggataagatcttgtcaatttgcatttgagaagtttgagcacctt 420
Query: 465 ggaaaacgttttcttcgaatggattaccgacctttagagattcagcgtattgcttgaatt 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 ggaaaacgttttcttcgaatggattaccgacctttagagattcagcgtattgcttgaatt 360
Query: 525 tttctaagacctcttcgtaaacagtatcttgaacgntaattcttgaacctgcgcaacaga 584
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 359 tttctaagacctcttcgtaaacagtatcttgaacgtaaattcttgaacctgcgcaacaga 300
Query: 585 cttcaccggagttgtagaagataccaaaagcantgttcttaacagctttatncaagtcag 644
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 299 cttcaccggagttgtagaagataccaaaagcaatgttcttaacagctttatccaagtcag 240
Query: 645 catcaccgaaaacgatatttggagacttacccaccaag-tctaaagtgaccttcttgatg 703
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 239 catcaccgaaaacgatatttggagactta-ccaccaagttctaaagtgaccttcttgatg 181
Query: 704 ggatcggcacaagttttcatattgtgacgaccagttagcagtggaaccagttgatagcga 763
| ||||||||||||||||||| |||||||||||| ||||||||||||||| ||| |||||
Sbjct: 180 gaatcggcacaagttttcataatgtgacgaccag-tagcagtggaaccag-tgaaagcga 123
Query: 764 cccttcttgatgttcaggatgggtacaaaattcttttacccgacgattttacc 816
||||||||||| ||||||||||||| ||||||||| | ||||||||||||||
Sbjct: 122 -ccttcttgatg-tcaggatgggtac-aaattctttca-ccgacgattttacc 74
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6100
Number of Sequences: 1807
Number of extensions: 6100
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)