BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZD08FM1.SCF screened BAC_end
(906 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1454 975 0.0
>3x_Contig1454
Length = 9243
Score = 975 bits (492), Expect = 0.0
Identities = 574/596 (96%), Gaps = 4/596 (0%)
Strand = Plus / Plus
Query: 87 tcattcggatcctccactgttatctcaacgacagataagtcattcatccattgttttact 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2686 tcattcggatcctccactgttatctcaacgacagataagtcattcatccattgttttact 2745
Query: 147 atagcctgatatagcctttttccatgaccatgaccttggtatggaggcatgattaaaaat 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2746 atagcctgatatagcctttttccatgaccatgaccttggtatggaggcatgattaaaaat 2805
Query: 207 tgggatatttttgccctgcatttctgttcatctgctttgctggaatcaaacgattgagca 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2806 tgggatatttttgccctgcatttctgttcatctgctttgctggaatcaaacgattgagca 2865
Query: 267 cctaaatatttccagaactgataagtggtggtgtacccaatacacttcttagagttttta 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2866 cctaaatatttccagaactgataagtggtggtgtacccaatacacttcttagagttttta 2925
Query: 327 ttgaatacaatgaatatttcccaagatgaatcattttcgtcaatgtatgatgccgactct 386
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 2926 ttgaatacaatgaatatttcccaagatgaatcattttcgtcaatgtatgaggccgactct 2985
Query: 387 atgaacaataacgtgaaaatctgcattcttttatgcaacattttgatagctgggtcctgc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2986 atgaacaataacgtgaaaatctgcattcttttatgcaacattttgatagctgggtcctgc 3045
Query: 447 aaagaaactctatatatgacaaattcttgatcaccgatttcatattcctcaactagtttg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3046 aaagaaactctatatatgacaaattcttgatcaccgatttcatattcctcaactagtttg 3105
Query: 507 tctttttcaagtaaaagcaaagtctcttgctccttggntgaacgtttttattcatgcttt 566
||||||||| ||||| ||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 3106 tctttttcaggtaaagcaaaagtctcttgctccttgg-tgaacgtttttatccatgcttc 3164
Query: 567 ctcatctttaataa-tacctcggcttcttggagcttatc-agaagtagcttctgtacatc 624
|||||||||||||| ||| ||| ||||| | |||||||| ||||||||||||||||||||
Sbjct: 3165 ctcatctttaataattacatcgtcttctggaagcttatcaagaagtagcttctgtacatc 3224
Query: 625 ttcattttcg-tattgagtttcccattctttttgacattaaccaatgggttgaacg 679
|||| ||||| ||||||||||| ||| | |||||||||||| ||||| |||||||
Sbjct: 3225 ttcaatttcgttattgagtttcgcatcatatttgacattaacaaatggtttgaacg 3280
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7053
Number of Sequences: 1807
Number of extensions: 7053
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)