BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZD08RM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1325 1055 0.0
>3x_Contig1325
Length = 7053
Score = 1055 bits (532), Expect = 0.0
Identities = 574/584 (98%), Gaps = 3/584 (0%)
Strand = Plus / Minus
Query: 45 gcttatccaaaatatcatcataatctagaaataatagtgcggatgtgtataatggtacaa 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2775 gcttatccaaaatatcatcataatctagaaataatagtgcggatgtgtataatggtacaa 2716
Query: 105 ttccatcattgcaagcatttgcatacactgtgcagcttttaaagcattttagaatccttc 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2715 ttccatcattgcaagcatttgcatacactgtgcagcttttaaagcattttagaatccttc 2656
Query: 165 tcaaagcagacgagctggataaagtttgtagaagaggctgtttaagtccattgtttgttt 224
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 2655 tcaaagcagacgagctggataaagtttgtagaagaggctgtttaagtccattgtatgttt 2596
Query: 225 gtaggctgagatcctgtcccgtcttaccggcaatacccattgccaatagccgctggatat 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2595 gtaggctgagatcctgtcccgtcttaccggcaatacccattgccaatagccgctggatat 2536
Query: 285 aaactgcgttgtcactaacaatcccaagcatgggagatgccattgttatgaagtttacag 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2535 aaactgcgttgtcactaacaatcccaagcatgggagatgccattgttatgaagtttacag 2476
Query: 345 gttcaacctgttcaaaaaactttggaatagttgtaagagatataagcaattgcgaaggat 404
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 2475 gttcaacctgttcaaaaaactttgg-atagttgtaagagatataagcaattgcgaaggat 2417
Query: 405 tgaaccaatccgcctaatgaatgtccaatgaatgaaatttttacagtagcatcattgtat 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2416 tgaaccaatccgcctaatgaatgtccaatgaatgaaatttttacagtagcatcattgtat 2357
Query: 465 aggttatgaactatatgttcggccaaccgggtccctagccattttatgcctttctctgtc 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2356 aggttatgaactatatgttcggccaaccgggtccctagccattttatgcctttctctgtc 2297
Query: 525 ttgcatacattgtcggtgaatcctttcacaactagcatttcctcatgttgggttttgagt 584
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 2296 ttgcatacattgtcggtgaatcctttcacaactagcatttcctcatgtt-ggttttgagt 2238
Query: 585 cttctacatctggtccctggatttaaaataattccgacgtaacg 628
||||| |||| || ||| ||| |||||||| ||||||||||||
Sbjct: 2237 cttctcaatct-gttccttgatataaaataaatccgacgtaacg 2195
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7446
Number of Sequences: 1807
Number of extensions: 7446
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)