BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZD09RM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1657 1215 0.0
>3x_Contig1657
Length = 14558
Score = 1215 bits (613), Expect = 0.0
Identities = 729/760 (95%), Gaps = 8/760 (1%)
Strand = Plus / Minus
Query: 44 cttgactctctacagtcctttgtgtacacagtacagcagtcgttgaagacgctctctcat 103
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 13307 cttgactctctacagtcctttgtgaacacagtacagcagtcgttgaagacgctctctcat 13248
Query: 104 gaaaacggagaatatttgtacattttgagaagtaaagctaatctagagttccaagcacgt 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13247 gaaaacggagaatatttgtacattttgagaagtaaagctaatctagagttccaagcacgt 13188
Query: 164 gaggctttatagcgacagcaaagagagaaggagaaggcagagtccgcttcgatgatttca 223
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 13187 gaggctttagagcgacagcaaagagagaaggagaaggcagagtccgcttcgatgaaagca 13128
Query: 224 tcaactgaattcgaactctcttcctcttccttttcctcttcctctccctccactgcatct 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13127 tcaactgaattcgaactctcttcctcttccttttcctcttcctctccctccactgcatct 13068
Query: 284 tcatgcactgcatcaagtacctctactgcttccttactcgctgtggaaaaaactatcgca 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13067 tcatgcactgcatcaagtacctctactgcttccttactcgctgtggaaaaaactatcgca 13008
Query: 344 ctagaagacctgcaatcctattatcaaaatgtatcaagtaccagattctctgtaacgcac 403
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 13007 ctagaagacctgcaatcctattatcaaaatgtatcaagta-cagattctctgtaacgcac 12949
Query: 404 tgtaacatttcccagcatcatctaatgctgtacgtgcagcgtatataataatatagtata 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12948 tgtaacatttcccagcatcatctaatgctgtacgtgcagcgtatataataatatagtata 12889
Query: 464 atatgtagtttaatgacataactcaactgttaccctccttcggtctgtgcatgtgcaaaa 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12888 atatgtagtttaatgacataactcaactgttaccctccttcggtctgtgcatgtgcaaaa 12829
Query: 524 ttaaaattaatccgctgtccatactaaacgagcacatgtncagaanaggaattttcnacg 583
||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||| |||
Sbjct: 12828 ttaaaattaatccgctgtccaaactaaacgagcacatgtccagaaaaggaattttcaacg 12769
Query: 584 actaanaatcaaagttctccagtaaagtaagatagacttgccactcagagctcatcgttc 643
||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 12768 actaaaaatcaagtttctccagtaaagtaagaaagacttgccactcagagctcatcgttc 12709
Query: 644 aaaggacaccaaactggtcaaatcaaggcatcgccttgtgaaaaaaaaagt--aaaaaaa 701
|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 12708 aaaggacaccaaactgttcaaatcaaggcatcgccttgtgaaaaaaaaagtaaaaaaaaa 12649
Query: 702 aaaaaactggat-aaactg-aaaaaacgaaaa-gttcattctaccgagt-ttttaaaggg 757
|||||||||||| |||||| |||||||||||| ||||| |||||||||| | | |||||
Sbjct: 12648 aaaaaactggataaaactgaaaaaaacgaaaaggttcaatctaccgagtatataaaagga 12589
Query: 758 acagaaacccatttgcaatttacg-tggattggaatattc 796
|||||||| |||||| | ||||| |||||||| ||||||
Sbjct: 12588 acagaaacacatttggcaattacgttggattgggatattc 12549
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,795
Number of Sequences: 1807
Number of extensions: 14795
Number of successful extensions: 1305
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)