BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZD10RM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1653 1201 0.0
>3x_Contig1653
Length = 14012
Score = 1201 bits (606), Expect = 0.0
Identities = 761/798 (95%), Gaps = 11/798 (1%)
Strand = Plus / Plus
Query: 46 ctttcgctagtattttaaggtaaagaatatatgtaagcatgaagtgaacagctgccgttg 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13000 ctttcgctagtattttaaggtaaagaatatatgtaagcatgaagtgaacagctgccgttg 13059
Query: 106 caaaacaaagaagttgaaaagcgtcactccccgatagcaagctataaattaatgaagata 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13060 caaaacaaagaagttgaaaagcgtcactccccgatagcaagctataaattaatgaagata 13119
Query: 166 aacgtatccattccacttcaggcagcaagatggttttcttatttgcttatacttatatgc 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13120 aacgtatccattccacttcaggcagcaagatggttttcttatttgcttatacttatatgc 13179
Query: 226 attgagattatcttcattttaccattatcgaatcttttatggatagattttatcaatagg 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13180 attgagattatcttcattttaccattatcgaatcttttatggatagattttatcaatagg 13239
Query: 286 ttgattccaaacaacagaatgcatgttatacctttgagcaacatggctaattcttggaca 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13240 ttgattccaaacaacagaatgcatgttatacctttgagcaacatggctaattcttggaca 13299
Query: 346 gttccatttgatttgcgggtcattgccaatgttacatcaactaaagagaatgaaatacga 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13300 gttccatttgatttgcgggtcattgccaatgttacatcaactaaagagaatgaaatacga 13359
Query: 406 tcagacatacctttagatgttaccttaaatttggggatttattgtacttctcaccgacca 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13360 tcagacatacctttagatgttaccttaaatttggggatttattgtacttctcaccgacca 13419
Query: 466 attgaggccgtgactttatcaatagatgacaatcccagaaagttacctcttgtatgtttt 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13420 attgaggccgtgactttatcaatagatgacaatcccagaaagttacctcttgtatgtttt 13479
Query: 526 gataacttgaattttctctcttca-gattcaatgggttcgattcagtgtcaaaa-ctgtc 583
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 13480 gataacttgaattttctctcttcaagattcaatgggttcgattcagtgtcaaaaactgtc 13539
Query: 584 aagaa-gatgtc-tcaatgactttaa-tttggatttcctgtaaatcctgata-caagaag 639
||||| |||||| ||||||||||||| ||||||||||||||||||||||||| ||||| |
Sbjct: 13540 aagaaagatgtcatcaatgactttaagtttggatttcctgtaaatcctgataacaagagg 13599
Query: 640 atcaggatagatt-aaaggactttactgaggactacctttttagttacatcaatgttcaa 698
||||||||||||| |||||||| |||||||||||||||||| |||||||||||||| |||
Sbjct: 13600 atcaggatagatttaaaggactatactgaggactaccttttaagttacatcaatgtccaa 13659
Query: 699 tttttcatgaaattttacggattcccaaagtttttactaagccgggagagaaattgggca 758
|||| |||||| | |||||||| |||||||||||||||| || |||| ||| ||
Sbjct: 13660 ttttcagtgaaatataccggattccgaaagtttttactaagctggagaagaacttgt-ca 13718
Query: 759 tttattgggcacttaattaattgcctagtt-gaattctaattgcttcccaattatctttt 817
| |||||||||||| |||| |||| ||||| || ||||| |||||||| | |||||||||
Sbjct: 13719 tctattgggcactttattatttgc-tagtttgatttctagttgcttccta-ttatctttt 13776
Query: 818 acgggggtcttcacctat 835
|| || ||||||| ||||
Sbjct: 13777 actggtgtcttcagctat 13794
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8718
Number of Sequences: 1807
Number of extensions: 8718
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)