BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC40ZD11FM1.SCF screened BAC_end (928 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig603 1051 0.0 >3x_Contig603 Length = 2779 Score = 1051 bits (530), Expect = 0.0 Identities = 611/634 (96%), Gaps = 3/634 (0%) Strand = Plus / Minus Query: 86 tttcctaaatctacggcctcttgaatccttcctaacacttgaacttcactcatttatacc 145 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 1680 tttcctaaatctacggcctcttgaatccttcctaacacttgaacttcactcatttagacc 1621 Query: 146 agttaaaaaggggaaagtcgatgtctcagatatcaaatgccttacagaatgtaatgttcc 205 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 1620 agttaaaaaggggaaagtcgatgtctcagagatcaaatgccttacagaatgtaatgttcc 1561 Query: 206 aactgtctaacagtaaataatgcaatataaatcgtgtcaattatagatctgaacactaat 265 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 1560 aactgtctaacagtaaataatgcaatagaaatcgtgtcaattatagatctgaacactaat 1501 Query: 266 tcgactggttacctggatgattatacgttgtgatcaggttttgattgtcgaggtatttgt 325 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1500 tcgactggttacctggatgattatacgttgtgatcaggttttgattgtcgaggtatttgt 1441 Query: 326 tgattcaccaaaaccccttcaaatcgtaattatg-cctttttatgttatcaaaagtaaac 384 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 1440 tgattcaccaaaaccccttcaaatcgtaattatgccctttttatgttatcaaaagtaaac 1381 Query: 385 tttaaatattaattttgacacacacgtgacatatttaatgttacccgggtggatatattg 444 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1380 tttaaatattaattttgacacacacgtgacatatttaatgttacccgggtggatatattg 1321 Query: 445 tccgtggcaattggtctctggaatctgaatgaaccgcataatttcagatggccgatacat 504 |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct: 1320 tccgtggcaattggtctctggaatttgaatgaaccgcataatttcagaaggccgatacag 1261 Query: 505 aaacaggtcaggggaaaatagttgatctgagattgttgctacaatagagcgaaggtcggc 564 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 1260 aaacaggtcaggggaaaaaagttgatctgagattgttgctacaatagagcgaaggtcggc 1201 Query: 565 agtttaagagttggtgagtttatccaatcttgattagtctatctaagttctgtgggtttg 624 ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct: 1200 agtttaagagttggtgagtttatccaatcttgattagtctatctaagttctgttgttttg 1141 Query: 625 aatcaccgagtttacttaagggttcgtttggcagttaatttcttttctaaactatccaat 684 |||||||||||| ||| | ||||| |||| ||| |||||||| |||||||||||||| || Sbjct: 1140 aatcaccgagttaactaaggggtttgttt-gcaattaatttc-tttctaaactatccgat 1083 Query: 685 catttttaaattgacttcattaaaaccaaaggct 718 |||| || ||||||||||| || || |||||||| Sbjct: 1082 cattcttcaattgacttcaatagaagcaaaggct 1049 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6588 Number of Sequences: 1807 Number of extensions: 6588 Number of successful extensions: 46 Number of sequences better than 1.0e-20: 1 length of query: 928 length of database: 10,358,551 effective HSP length: 16 effective length of query: 912 effective length of database: 10,329,639 effective search space: 9420630768 effective search space used: 9420630768 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)