BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZD11RM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1519 1140 0.0
>3x_Contig1519
Length = 9351
Score = 1140 bits (575), Expect = 0.0
Identities = 627/639 (98%), Gaps = 4/639 (0%)
Strand = Plus / Plus
Query: 41 gctttattctgcttgttattctttcaag-attcctttgagcttccagatcgaaactctgc 99
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 8709 gctttattctgcttgttattcttccaaggattcctttgagcttccagatcgaaactctgc 8768
Query: 100 tccaaatcgatgtccgacttcgtggataaccgttcatcgtaaaatgcgctatctctctca 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8769 tccaaatcgatgtccgacttcgtggataaccgttcatcgtaaaatgcgctatctctctca 8828
Query: 160 cctttgtatcccctgtaaccaccgtaaccaggatctggatctctgataggctgttataca 219
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 8829 cctttgtatcccctgtaaccaccgtaaccaggatctggatctctgataggctgatataca 8888
Query: 220 accattggtggttgttgttgttgctgataattctggttcgttggatccttggacttctta 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8889 accattggtggttgttgttgttgctgataattctggttcgttggatccttggacttctta 8948
Query: 280 ccgcaagcgcagcaccagcaaaagaattccgtaatatttgtgacaccagatttgaagaaa 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8949 ccgcaagcgcagcaccagcaaaagaattccgtaatatttgtgacaccagatttgaagaaa 9008
Query: 340 tagagcacaccacctatcaggtatatggcaaaaattgatgctagcactatacccactata 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9009 tagagcacaccacctatcaggtatatggcaaaaattgatgctagcactatacccactata 9068
Query: 400 gcaatgattttgcacgctttgttatccatacacgtatcccatgatttgaagctctgcgct 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9069 gcaatgattttgcacgctttgttatccatacacgtatcccatgatttgaagctctgcgct 9128
Query: 460 gtgttcttgacatcacttgtccactctcgagcccacagctgtcttctggcaaattgatct 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9129 gtgttcttgacatcacttgtccactctcgagcccacagctgtcttctggcaaattgatct 9188
Query: 520 aacgtactttgatccattcttctgcactataaaagcaacttctgtgtaatttag-tttat 578
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 9189 aacgtactttgatccattcttctgcactataaaagcaacttctgtgtaatttagttttat 9248
Query: 579 tacacacaacactcatttttgcttcgtgtggggattcacgacagatagtgcagtgacccg 638
|||||||||||||| |||||||||||||| | ||||||||||||||||||||||| |||
Sbjct: 9249 aacacacaacactcaattttgcttcgtgtgtgaattcacgacagatagtgcagtga-ccg 9307
Query: 639 ctgattttgttattcctcaagaggattacctcattaata 677
||||||||||||||||||| || |||||| |||||||||
Sbjct: 9308 ctgattttgttattcctcatga-gattacttcattaata 9345
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8830
Number of Sequences: 1807
Number of extensions: 8830
Number of successful extensions: 110
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)