BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZD12FM1.SCF screened BAC_end
(997 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1320 1179 0.0
>3x_Contig1320
Length = 7350
Score = 1179 bits (595), Expect = 0.0
Identities = 701/726 (96%), Gaps = 9/726 (1%)
Strand = Plus / Minus
Query: 86 tatcgaacgttagatatttccaaacctctcctatatcgagaaaaatgccacttccacctg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4825 tatcgaacgttagatatttccaaacctctcctatatcgagaaaaatgccacttccacctg 4766
Query: 146 ttcttgaatcacgtcgtcccaaagaatctccggaattcgactattctacactttccaatt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4765 ttcttgaatcacgtcgtcccaaagaatctccggaattcgactattctacactttccaatt 4706
Query: 206 acaagtctttcaaggtatatcattcacagttggatgttagcgttgatttcaaaaagaaaa 265
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 4705 acaagtctttcaaggtaaagcattcacagttggatgttagcgttgatttcaaaaagaaaa 4646
Query: 266 ccattagtggttctgtctcttacgagattgaaaaggtgaagaaggatgaaaacactatca 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4645 ccattagtggttctgtctcttacgagattgaaaaggtgaagaaggatgaaaacactatca 4586
Query: 326 agttggatacttcttacttgaagatctctaaagtcaaagtggatgatgaagacgacgtga 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4585 agttggatacttcttacttgaagatctctaaagtcaaagtggatgatgaagacgacgtga 4526
Query: 386 agtttaaattgttagaaagaaaacatccattgggtgctcagttaattgttagtccatctt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4525 agtttaaattgttagaaagaaaacatccattgggtgctcagttaattgttagtccatctt 4466
Query: 446 ctttgccggaaatattccatttgtgcttacaattttcgacaactgcagactgtacagcat 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4465 ctttgccggaaatattccatttgtgcttacaattttcgacaactgcagactgtacagcat 4406
Query: 506 tgcaatggcttgatgaacaccaaacatctggggataccgtacgttttctctcaattggaa 565
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 4405 tgcaatggcttgatgaacaccaaacatct-gggaaaccgtacgttttctctcaattggaa 4347
Query: 566 gccatccatgcgagaagtctattcacatgttttgataccccaagtgtaaaatctacatat 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4346 gccatccatgcgagaagtctattcacatgttttgataccccaagtgtaaaatctacatat 4287
Query: 626 ctcgccaacaatcagtcctgatttaccatttgggttttcgggtatccaaacaggttacga 685
||||||||| |||| |||| |||||| ||| |||||||||||||||||||||||||||
Sbjct: 4286 ctcgccaac-atcaagtctgaattaccagttgtgttttcgggtatccaaacaggttacga 4228
Query: 686 tgattctactaaggtctactctttcaagcaaggaagtaccatttccaccattttttgatc 745
||||||||||||||||||||||||||||||| ||||||||| ||||| || | |||||||
Sbjct: 4227 tgattctactaaggtctactctttcaagcaa-gaagtaccaattccagca-tatttgatc 4170
Query: 746 cgtattcgcatcaggggatttgggcccacccctgatatttggtccctcgttccaaagttt 805
||| |||||||||| ||||||| ||| | |||||| ||||| ||||||||||||||||
Sbjct: 4169 ggta-tcgcatcaggtgatttgg--ccagcgctgata-ttggt-cctcgttccaaagttt 4115
Query: 806 acgtgg 811
||||||
Sbjct: 4114 acgtgg 4109
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7386
Number of Sequences: 1807
Number of extensions: 7386
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 997
length of database: 10,358,551
effective HSP length: 16
effective length of query: 981
effective length of database: 10,329,639
effective search space: 10133375859
effective search space used: 10133375859
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)