BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC40ZD12RM1.SCF screened BAC_end (955 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1600 1142 0.0 >3x_Contig1600 Length = 9359 Score = 1142 bits (576), Expect = 0.0 Identities = 736/777 (94%), Gaps = 11/777 (1%) Strand = Plus / Plus Query: 44 ctttatttcaacttcgtgttcgcttgtaggatatctctttttttcaattaattaggaacg 103 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 5217 ctttatttcaacttcgtgttcgcaagtaggatatctctttttttcaattaattaggaacg 5276 Query: 104 ttaacaaaaacagtcaattttgaatcgaagtttttgcctgttgtcgtcttagtttctgac 163 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5277 ttaacaaaaacagtcaattttgaatcgaagtttttgcctgttgtcgtcttagtttctgac 5336 Query: 164 tctactactatcaagtacttcttcttttgttccctttttttgtgagtaattttggattga 223 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5337 tctactactatcaagtacttcttcttttgttccctttttttgtgagtaattttggattga 5396 Query: 224 aaattcacaaagaagagccataaaaaaataaaaacaaaagaagatataaacgagaaagat 283 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5397 aaattcacaaagaagagccataaaaaaataaaaacaaaagaagatataaacgagaaagat 5456 Query: 284 tcattgaaagttaatcatcgttgaaaagttcaacattttgtgaattgcaagggatttttt 343 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5457 tcattgaaagttaatcatcgttgaaaagttcaacattttgtgaattgcaagggatttttt 5516 Query: 344 tacttgataactggatatatcaattttacaacacacgtacagaacaaagcgaccatctat 403 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5517 tacttgataactggatatatcaattttacaacacacgtacagaacaaagcgaccatctat 5576 Query: 404 tgatttaaggtttgtgttttgcttctttcgttatacagaaaagaacaaaaaataactgtc 463 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5577 tgatttaaggtttgtgttttgcttctttcgttatacagaaaagaacaaaaaataactgtc 5636 Query: 464 ttttgaacaatgttgagaactataaagtcatctcagcgtttgttacatgctttctaa--t 521 ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| | Sbjct: 5637 ttttgaacaatgttgagaactataaggtcatctcagcgtttgttacatgc-ttctaaatt 5695 Query: 522 caccaggatcggtgctgtaagcaaaccgacttcctaggctgttttcagtcgtggattggc 581 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 5696 caccaggatcggtgctgtaagcaaaccgacttccttggctgttttcagtcgtggattggc 5755 Query: 582 tagtggtgcatcttcgacggacatcttcctgttca-caccattgcatcatatatcgatta 640 ||||||||||||||||||||||| |||||||| || ||||| |||||||||||||||| | Sbjct: 5756 tagtggtgcatcttcgacggacaacttcctgtccaccaccaatgcatcatatatcgatga 5815 Query: 641 gatgtacgaagcttggcaaaaagatccaacttnantttcatgtctcttggggatgcttat 700 ||||||||||||||||||||| ||||| |||| | |||||||||||| |||||||||| Sbjct: 5816 gatgtacgaagcttggcaaaaggatcccacttcag-ttcatgtctctt-gggatgctta- 5872 Query: 701 tttcaggaccttgggttattttgaattttcaagccttttttgccttttccggccccacca 760 ||||| || | |||| || | ||||| ||| ||||| || |||||| || ||||||||| Sbjct: 5873 tttcaagaacatggg-taatctgaatattccagcctcttctgccttcacc-gccccacca 5930 Query: 761 actttaa-tccattaccaacggttccctgttgtgcctcaagattttttgataagggg 816 || |||| |||| ||||||||| | |||| ||||||||||||| | |||||| |||| Sbjct: 5931 acattaattccaataccaacgggt-cctggtgtgcctcaagatatattgataggggg 5986 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,181 Number of Sequences: 1807 Number of extensions: 10181 Number of successful extensions: 90 Number of sequences better than 1.0e-20: 1 length of query: 955 length of database: 10,358,551 effective HSP length: 16 effective length of query: 939 effective length of database: 10,329,639 effective search space: 9699531021 effective search space used: 9699531021 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)