BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC40ZD12RM1.SCF screened BAC_end
         (955 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1600                                                        1142   0.0  

>3x_Contig1600 
          Length = 9359

 Score = 1142 bits (576), Expect = 0.0
 Identities = 736/777 (94%), Gaps = 11/777 (1%)
 Strand = Plus / Plus

                                                                        
Query: 44   ctttatttcaacttcgtgttcgcttgtaggatatctctttttttcaattaattaggaacg 103
            |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 5217 ctttatttcaacttcgtgttcgcaagtaggatatctctttttttcaattaattaggaacg 5276

                                                                        
Query: 104  ttaacaaaaacagtcaattttgaatcgaagtttttgcctgttgtcgtcttagtttctgac 163
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5277 ttaacaaaaacagtcaattttgaatcgaagtttttgcctgttgtcgtcttagtttctgac 5336

                                                                        
Query: 164  tctactactatcaagtacttcttcttttgttccctttttttgtgagtaattttggattga 223
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5337 tctactactatcaagtacttcttcttttgttccctttttttgtgagtaattttggattga 5396

                                                                        
Query: 224  aaattcacaaagaagagccataaaaaaataaaaacaaaagaagatataaacgagaaagat 283
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5397 aaattcacaaagaagagccataaaaaaataaaaacaaaagaagatataaacgagaaagat 5456

                                                                        
Query: 284  tcattgaaagttaatcatcgttgaaaagttcaacattttgtgaattgcaagggatttttt 343
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5457 tcattgaaagttaatcatcgttgaaaagttcaacattttgtgaattgcaagggatttttt 5516

                                                                        
Query: 344  tacttgataactggatatatcaattttacaacacacgtacagaacaaagcgaccatctat 403
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5517 tacttgataactggatatatcaattttacaacacacgtacagaacaaagcgaccatctat 5576

                                                                        
Query: 404  tgatttaaggtttgtgttttgcttctttcgttatacagaaaagaacaaaaaataactgtc 463
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5577 tgatttaaggtttgtgttttgcttctttcgttatacagaaaagaacaaaaaataactgtc 5636

                                                                        
Query: 464  ttttgaacaatgttgagaactataaagtcatctcagcgtttgttacatgctttctaa--t 521
            ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||  |
Sbjct: 5637 ttttgaacaatgttgagaactataaggtcatctcagcgtttgttacatgc-ttctaaatt 5695

                                                                        
Query: 522  caccaggatcggtgctgtaagcaaaccgacttcctaggctgttttcagtcgtggattggc 581
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 5696 caccaggatcggtgctgtaagcaaaccgacttccttggctgttttcagtcgtggattggc 5755

                                                                        
Query: 582  tagtggtgcatcttcgacggacatcttcctgttca-caccattgcatcatatatcgatta 640
            ||||||||||||||||||||||| |||||||| || ||||| |||||||||||||||| |
Sbjct: 5756 tagtggtgcatcttcgacggacaacttcctgtccaccaccaatgcatcatatatcgatga 5815

                                                                        
Query: 641  gatgtacgaagcttggcaaaaagatccaacttnantttcatgtctcttggggatgcttat 700
            ||||||||||||||||||||| ||||| |||| |  |||||||||||| |||||||||| 
Sbjct: 5816 gatgtacgaagcttggcaaaaggatcccacttcag-ttcatgtctctt-gggatgctta- 5872

                                                                        
Query: 701  tttcaggaccttgggttattttgaattttcaagccttttttgccttttccggccccacca 760
            ||||| || | |||| || | ||||| ||| ||||| || ||||||  || |||||||||
Sbjct: 5873 tttcaagaacatggg-taatctgaatattccagcctcttctgccttcacc-gccccacca 5930

                                                                     
Query: 761  actttaa-tccattaccaacggttccctgttgtgcctcaagattttttgataagggg 816
            || |||| |||| ||||||||| | |||| ||||||||||||| | |||||| ||||
Sbjct: 5931 acattaattccaataccaacgggt-cctggtgtgcctcaagatatattgataggggg 5986


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,181
Number of Sequences: 1807
Number of extensions: 10181
Number of successful extensions: 90
Number of sequences better than 1.0e-20: 1
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)