BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZE01FM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1766 1005 0.0
>3x_Contig1766
Length = 23951
Score = 1005 bits (507), Expect = 0.0
Identities = 560/575 (97%), Gaps = 2/575 (0%)
Strand = Plus / Plus
Query: 86 atatgtattctggagttgaccgaatttagctgagcacacgtatctactgagcttctttca 145
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 15869 atatgtattctggagttgaccgaatttagctgagcacacgtatctactgagcgtctgtca 15928
Query: 146 atcatcaccttgtcggtcttttaacagtgtcacaatgttataatcgtacctaaccgggta 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15929 atcatcaccttgtcggtcttttaacagtgtcacaatgttataatcgtacctaaccgggta 15988
Query: 206 acaaaggtactcaatcatcctttttccttagttttttttttaatatttactgtcgctaca 265
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 15989 acaaaggtactcaatcatcctttttccttagtttggtttttaatatttactgtcgctaca 16048
Query: 266 tagttaagatcttgactttttaagatattcgattcttgaaagtttaatatcatttctttt 325
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 16049 tagttaagatcttgactttttaagatattcgattcttgaaagttgaatatcatgtctttt 16108
Query: 326 gtatgcctttggatatccaattagatttaaacaaacaaaatggcgctcgcggctaatagc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16109 gtatgcctttggatatccaattagatttaaacaaacaaaatggcgctcgcggctaatagc 16168
Query: 386 atcaactctgatctccctctgtcatacgtttcattacttctacacactttcaaaggttac 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16169 atcaactctgatctccctctgtcatacgtttcattacttctacacactttcaaaggttac 16228
Query: 446 cgggacgatggctttctgtttaaatctccgtatattaaaaacatcatgttttctttatta 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16229 cgggacgatggctttctgtttaaatctccgtatattaaaaacatcatgttttctttatta 16288
Query: 506 tatatattaaaggaaacgtttttccaccgtaagtgaaattttc-aaaattctctggcgaa 564
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 16289 tatatattaaaggaaacgtttttccaccgtaagtgaaattttcaaaaattctctgtcgaa 16348
Query: 565 ataaagtacatcgtagccaagagatcaaaaaaaggacaagacccatagacagcaagcgtt 624
|||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 16349 ataaagtacatcgtagccaagagaacaaaaaaaggacaagacccagagacagcaagcgtc 16408
Query: 625 ggcgatttggactttattcgtaaaatccttattgg 659
|||||||||||| |||| |||||| || |||||||
Sbjct: 16409 ggcgatttggac-ttatacgtaaattctttattgg 16442
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,749
Number of Sequences: 1807
Number of extensions: 15749
Number of successful extensions: 130
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)