BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZE01RM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1720 1439 0.0
>3x_Contig1720
Length = 19870
Score = 1439 bits (726), Expect = 0.0
Identities = 844/878 (96%), Gaps = 4/878 (0%)
Strand = Plus / Minus
Query: 45 gcttttaaacactttaaaagaggatgatcctggattaagaaagttggtagaggtagcaga 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16594 gcttttaaacactttaaaagaggatgatcctggattaagaaagttggtagaggtagcaga 16535
Query: 105 ctttcaagagttaacatcgattggtcttggacggactggagaaatgaataggatgatcaa 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16534 ctttcaagagttaacatcgattggtcttggacggactggagaaatgaataggatgatcaa 16475
Query: 165 aaacctcacaaatgaaactctttgggaattcttattattgaccaaaaatacgctaatgga 224
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 16474 aaacctcacaaatgaaactctttgggaattcttattattgaccaaaaatacgctaaggga 16415
Query: 225 atttctagccagtgagcatattcagggagatatagacgagaggatagtccatttcttact 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16414 atttctagccagtgagcatattcagggagatatagacgagaggatagtccatttcttact 16355
Query: 285 ttctcctggaacagtgttgagtgtggtagatttctgtggatgttccggatccgttttcac 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16354 ttctcctggaacagtgttgagtgtggtagatttctgtggatgttccggatccgttttcac 16295
Query: 345 aaaacagtttgttacagcagtagaaaagatggcggcacacccaagttctcgtgaaaactt 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16294 aaaacagtttgttacagcagtagaaaagatggcggcacacccaagttctcgtgaaaactt 16235
Query: 405 tcagattacatgtctaggtttgaatgactgtacagacattccagataataccctttcaaa 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16234 tcagattacatgtctaggtttgaatgactgtacagacattccagataataccctttcaaa 16175
Query: 465 gctattgaaccttctgccggagttacagaagttagatttaacgcatactgctattgacga 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16174 gctattgaaccttctgccggagttacagaagttagatttaacgcatactgctattgacga 16115
Query: 525 tggtactctaataaataatttaccacattggaaaaatttgacacatttatcctttggaga 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16114 tggtactctaataaataatttaccacattggaaaaatttgacacatttatcctttggaga 16055
Query: 585 atgtttgcaattgacgccaagaagaattttggagttcttttcataccatccagctgttac 644
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct: 16054 atgtttgcaattgacgccaagaggaattttggagttcttttcataccatccagctgtaac 15995
Query: 645 agatgataataacattagtacgctacaat-gctaaacgttgcagtgcattcacatacgtt 703
|||||| ||||||| |||||||||||||| ||||||||| ||||||| |||||||||
Sbjct: 15994 agatgaaaataacaatagtacgctacaatggctaaacgtgcaagtgcatccacatacgtc 15935
Query: 704 aacatgtaccgatacgcagacattggttttgttaaagaagttatgttcatatggacccat 763
|||||| |||||||||||||||||| |||||||||||||||||||| |||||||| ||
Sbjct: 15934 aacatggaccgatacgcagacattgtttttgttaaagaagttatgtcaatatggacacaa 15875
Query: 764 taaaacgttggattaccctaacatcggaggactggctttgcactatttcaaatgaccgca 823
|||||||||||| |||| |||||||||||||||| | |||||||| |||| |||||||||
Sbjct: 15874 taaaacgttggaataccttaacatcggaggactgccattgcacta-ttcagatgaccgca 15816
Query: 824 cgcttatcaaaactccgcacttttatcaggggcatgaattccttacagtttattaagttg 883
|||| |||||||||||||||| ||||||| | |||| |||||||||||||||| ||||||
Sbjct: 15815 cgctaatcaaaactccgcactattatcagtgccatg-attccttacagtttataaagttg 15757
Query: 884 aattttccacccttggaaagtttggattataaaggata 921
||||||||| | ||| ||||||| || |||||||||||
Sbjct: 15756 aattttccagcattgaaaagttt-gaatataaaggata 15720
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6820
Number of Sequences: 1807
Number of extensions: 6820
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)