BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZE02FM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1571 1205 0.0
>3x_Contig1571
Length = 13536
Score = 1205 bits (608), Expect = 0.0
Identities = 630/636 (99%), Gaps = 1/636 (0%)
Strand = Plus / Minus
Query: 90 atctaaaacttgcttaccacctggcttaatcacgttagtgagctctaagagtctgtcact 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 atctaaaacttgcttaccacctggcttaatcacgttagtgagctctaagagtctgtcact 576
Query: 150 gagtgtagatttaccatgatcaacatgagccactatagaaaagttacgatatctttcaat 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 gagtgtagatttaccatgatcaacatgagccactatagaaaagttacgatatctttcaat 516
Query: 210 tggaatggcatcgatcctctcttgtaatgaatgattacttctaacttgttgaaaggcata 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tggaatggcatcgatcctctcttgtaatgaatgattacttctaacttgttgaaaggcata 456
Query: 270 cctcacatgtcgaagcaacctcctattgaacataattatcgggtctgaaatttagaactc 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cctcacatgtcgaagcaacctcctattgaacataattatcgggtctgaaatttagaactc 396
Query: 330 gtagctctataagcctttctctttcgtctatcgtttaacgtctagaatttatgtttatag 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gtagctctataagcctttctctttcgtctatcgtttaacgtctagaatttatgtttatag 336
Query: 390 atcttccagtcattaaacattgttggcaacgaattgtttaaatttgatgtttatggccgt 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 atcttccagtcattaaacattgttggcaacgaattgtttaaatttgatgtttatggccgt 276
Query: 450 tcagatctaaagttcaactttaactcatacatacaaagggaataacaaaaaaacgtgata 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tcagatctaaagttcaactttaactcatacatacaaagggaataacaaaaaaacgtgata 216
Query: 510 gcaagctaatcctcgggacgaattttgcaatgaaactaaaactaagtattcaagcaggta 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 gcaagctaatcctcgggacgaattttgcaatgaaactaaaactaagtattcaagcaggta 156
Query: 570 ctgaggactactcattgttcatgacaacgttgataacggtgtccaaactacgaaaaacat 629
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 155 ctgaggactactcattgttcaggacaacgttgataacggtgtccaaactacgaaaaacat 96
Query: 630 gtattttaagatttacctcttctatgctggtcattatatcaacaccaaacagtacaagaa 689
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 95 gtattttaagatttacctcttctaggctggtcattatatcaacaccaaacagtacaggaa 36
Query: 690 cggtcatatatcatggtcaagttttggtgcacagtc 725
|||||||| |||| ||||||| ||||||||||||||
Sbjct: 35 cggtcatagatcagggtcaag-tttggtgcacagtc 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6019
Number of Sequences: 1807
Number of extensions: 6019
Number of successful extensions: 25
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)