BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC40ZE02RM1.SCF screened BAC_end (913 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1786 1526 0.0 >3x_Contig1786 Length = 33838 Score = 1526 bits (770), Expect = 0.0 Identities = 849/869 (97%), Gaps = 6/869 (0%) Strand = Plus / Minus Query: 47 tgctctgactctgcc-cagctcgcttcgtctttt-atagcttctagaatcttgcaaaggc 104 ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 5533 tgctctgactctgccacagctcgcttcgtcttttcatagcttctagaatcttgcaaaggc 5474 Query: 105 tctaatctagccaagtaccgctttaacgtatcttccaaaggagggattggcaacctgggc 164 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5473 tctaatctagccaagtaccgctttaacgtatcttccaaaggagggattggcaacctgggc 5414 Query: 165 aaaacttcctggttcgtatctttaatagatggcataacaatatgttaacgtccttagttg 224 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5413 aaaacttcctggttcgtatctttaatagatggcataacaatatgttaacgtccttagttg 5354 Query: 225 atggctcttagcactttactcctgtgaatggtatccacaaatagcaagactttagggaga 284 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5353 atggctcttagcactttactcctgtgaatggtatccacaaatagcaagactttagggaga 5294 Query: 285 ggaaattttaatcgatactccgaacagtcagctatttatatatacgtatataacttatga 344 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5293 ggaaattttaatcgatactccgaacagtcagctatttatatatacgtatataacttatga 5234 Query: 345 gttctatccttcattgcaaatcatcaatacatatgtcctttaatcatttgagttagtcat 404 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5233 gttctatccttcattgcaaatcatcaatacatatgtcctttaatcatttgagttagtcat 5174 Query: 405 gcaatatttgagaattagcgcccttctcttaactcatccctactacgatttgttttcttt 464 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5173 gcaatatttgagaattagcgcccttctcttaactcatccctactacgatttgttttcttt 5114 Query: 465 ttccgaaacatccggacagtcatccatcatcgaccttcaccaacttttctccatttaacc 524 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5113 ttccgaaacatccggacagtcatccatcatcgaccttcaccaacttttctccatttaacc 5054 Query: 525 aaataaaggttttgatgatcagctntatgcgaaaaaacctttgaatgaccacaaacaatg 584 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | Sbjct: 5053 aaataaaggttttgatgatcagctttatgcgaaaaaacctttgaatgaccacaaacaagg 4994 Query: 585 gaagcagaataaaacggagtagtcagaacagaccgtgcacttagtttccggttagggtaa 644 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4993 gaagcagaataaaacggagtagtcagaacagaccgtgcacttagtttccggttagggtaa 4934 Query: 645 tcacaagatatggatactgggtaatgcagacagagacctttcgtattattattagtggca 704 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4933 tcacaagatagggatactgggtaatgcagacagagacctttcgtattattattagtggca 4874 Query: 705 gtaagtagagaaacggcngaacacacagagagagagatacagagaaagagatatactaga 764 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 4873 gtaagtagagaaacggcagaacacacagagagagagatacagagaaagagatatactaga 4814 Query: 765 tagatctgggaatggantattcaatagcccatggaacctatgcgctaaaac-agtgattg 823 |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct: 4813 tagatctgggaatggataattcaatagcccatggaacctatgcgctaaaacaagtgattg 4754 Query: 824 ttcgcggggcttatgggtgtgtgtacannagca-tggaaagaggcacgaataaacc-tgt 881 ||||||||||||||| |||||||| |||| || ||||||||||||||||||| ||| Sbjct: 4753 gtcgcggggcttatggtgttgtgtaca-gagcagtgaaaagaggcacgaataaaccatgt 4695 Query: 882 gcgattaaacanatcgagtttgaaaatga 910 ||||||||||| |||||||||||| |||| Sbjct: 4694 gcgattaaacagatcgagtttgaagatga 4666 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6049 Number of Sequences: 1807 Number of extensions: 6049 Number of successful extensions: 37 Number of sequences better than 1.0e-20: 1 length of query: 913 length of database: 10,358,551 effective HSP length: 16 effective length of query: 897 effective length of database: 10,329,639 effective search space: 9265686183 effective search space used: 9265686183 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)