BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC40ZE02RM1.SCF screened BAC_end
         (913 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1786                                                        1526   0.0  

>3x_Contig1786 
          Length = 33838

 Score = 1526 bits (770), Expect = 0.0
 Identities = 849/869 (97%), Gaps = 6/869 (0%)
 Strand = Plus / Minus

                                                                        
Query: 47   tgctctgactctgcc-cagctcgcttcgtctttt-atagcttctagaatcttgcaaaggc 104
            ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 5533 tgctctgactctgccacagctcgcttcgtcttttcatagcttctagaatcttgcaaaggc 5474

                                                                        
Query: 105  tctaatctagccaagtaccgctttaacgtatcttccaaaggagggattggcaacctgggc 164
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5473 tctaatctagccaagtaccgctttaacgtatcttccaaaggagggattggcaacctgggc 5414

                                                                        
Query: 165  aaaacttcctggttcgtatctttaatagatggcataacaatatgttaacgtccttagttg 224
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5413 aaaacttcctggttcgtatctttaatagatggcataacaatatgttaacgtccttagttg 5354

                                                                        
Query: 225  atggctcttagcactttactcctgtgaatggtatccacaaatagcaagactttagggaga 284
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5353 atggctcttagcactttactcctgtgaatggtatccacaaatagcaagactttagggaga 5294

                                                                        
Query: 285  ggaaattttaatcgatactccgaacagtcagctatttatatatacgtatataacttatga 344
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5293 ggaaattttaatcgatactccgaacagtcagctatttatatatacgtatataacttatga 5234

                                                                        
Query: 345  gttctatccttcattgcaaatcatcaatacatatgtcctttaatcatttgagttagtcat 404
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5233 gttctatccttcattgcaaatcatcaatacatatgtcctttaatcatttgagttagtcat 5174

                                                                        
Query: 405  gcaatatttgagaattagcgcccttctcttaactcatccctactacgatttgttttcttt 464
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5173 gcaatatttgagaattagcgcccttctcttaactcatccctactacgatttgttttcttt 5114

                                                                        
Query: 465  ttccgaaacatccggacagtcatccatcatcgaccttcaccaacttttctccatttaacc 524
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5113 ttccgaaacatccggacagtcatccatcatcgaccttcaccaacttttctccatttaacc 5054

                                                                        
Query: 525  aaataaaggttttgatgatcagctntatgcgaaaaaacctttgaatgaccacaaacaatg 584
            |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 5053 aaataaaggttttgatgatcagctttatgcgaaaaaacctttgaatgaccacaaacaagg 4994

                                                                        
Query: 585  gaagcagaataaaacggagtagtcagaacagaccgtgcacttagtttccggttagggtaa 644
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4993 gaagcagaataaaacggagtagtcagaacagaccgtgcacttagtttccggttagggtaa 4934

                                                                        
Query: 645  tcacaagatatggatactgggtaatgcagacagagacctttcgtattattattagtggca 704
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4933 tcacaagatagggatactgggtaatgcagacagagacctttcgtattattattagtggca 4874

                                                                        
Query: 705  gtaagtagagaaacggcngaacacacagagagagagatacagagaaagagatatactaga 764
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4873 gtaagtagagaaacggcagaacacacagagagagagatacagagaaagagatatactaga 4814

                                                                        
Query: 765  tagatctgggaatggantattcaatagcccatggaacctatgcgctaaaac-agtgattg 823
            ||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 4813 tagatctgggaatggataattcaatagcccatggaacctatgcgctaaaacaagtgattg 4754

                                                                        
Query: 824  ttcgcggggcttatgggtgtgtgtacannagca-tggaaagaggcacgaataaacc-tgt 881
             |||||||||||||||   ||||||||  |||| || ||||||||||||||||||| |||
Sbjct: 4753 gtcgcggggcttatggtgttgtgtaca-gagcagtgaaaagaggcacgaataaaccatgt 4695

                                         
Query: 882  gcgattaaacanatcgagtttgaaaatga 910
            ||||||||||| |||||||||||| ||||
Sbjct: 4694 gcgattaaacagatcgagtttgaagatga 4666


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6049
Number of Sequences: 1807
Number of extensions: 6049
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)