BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZE03FM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1198 507 e-143
3x_Contig1426 115 2e-25
>3x_Contig1198
Length = 5263
Score = 507 bits (256), Expect = e-143
Identities = 272/276 (98%), Gaps = 1/276 (0%)
Strand = Plus / Plus
Query: 84 gcttccaacatgagacaattgaagaagggtgctaacgaagctaccaagactttgaaccgt 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4964 gcttccaacatgagacaattgaagaagggtgctaacgaagctaccaagactttgaaccgt 5023
Query: 144 ggtatttccgaattcattatcatggctgctgactgtgaacctattgaaatcttgttgcac 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5024 ggtatttccgaattcattatcatggctgctgactgtgaacctattgaaatcttgttgcac 5083
Query: 204 ttgccattgttgtgtgtttataagaacgttccatacgtctttgttccatccagaactgct 263
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 5084 ttgccattgttgtgtgaagataagaacgttccatacgtctttgttccatccagaactgct 5143
Query: 264 ttgggtagagcttgtggtgtttccagaccagttattgctgcttctattaccactaacgat 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5144 ttgggtagagcttgtggtgtttccagaccagttattgctgcttctattaccactaacgat 5203
Query: 324 gcttctgctatcaaaagccaaatctatgccgttaag 359
||||||||||||||||||||||||| ||||||||||
Sbjct: 5204 gcttctgctatcaaaagccaaatct-tgccgttaag 5238
>3x_Contig1426
Length = 8319
Score = 115 bits (58), Expect = 2e-25
Identities = 130/146 (89%), Gaps = 6/146 (4%)
Strand = Plus / Plus
Query: 656 tttttgtctggtcaaattaa-aaatggttacaggcctgtgttattccagatgattttgtc 714
||||||| |||| ||||||| |||||||||||||||||||| |||||||||||| |||||
Sbjct: 4 tttttgtttggttaaattaagaaatggttacaggcctgtgt-attccagatgatattgtc 62
Query: 715 aagttggtaaaaaaaagtaattaatttgacacaatttttttgggcttttcgacttttcca 774
| ||||||||||||||||||| |||||||||||| | ||||| || ||||||| | ||||
Sbjct: 63 a-gttggtaaaaaaaagtaataaatttgacacaa-tcttttgtgc-tttcgac-tatcca 118
Query: 775 acccttaatttacaaatttggtgaaa 800
||||| ||||||||| |||| |||||
Sbjct: 119 accctaaatttacaagtttgttgaaa 144
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9669
Number of Sequences: 1807
Number of extensions: 9669
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 2
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)