BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZE03RM1.SCF screened BAC_end
(905 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1517 1132 0.0
3x_Contig38 894 0.0
>3x_Contig1517
Length = 8289
Score = 1132 bits (571), Expect = 0.0
Identities = 740/783 (94%), Gaps = 10/783 (1%)
Strand = Plus / Plus
Query: 48 taccacagatcgccagtcataccattttattacctgcgagttaaactgtcgtacatgatc 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4617 taccacagatcgccagtcataccattttattacctgcgagttaaactgtcgtacatgatc 4676
Query: 108 gaatattctttcatatatcttatcatttttgtttgaaccactcaattcgcgttcaactac 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4677 gaatattctttcatatatcttatcatttttgtttgaaccactcaattcgcgttcaactac 4736
Query: 168 atcccacatccttttatttacaactgctttgaatgagttcaaccctgaatcaattttatg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4737 atcccacatccttttatttacaactgctttgaatgagttcaaccctgaatcaattttatg 4796
Query: 228 tttctttatcccatcggttcccctaggagccaacgataggttttcgaaatcatatattag 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4797 tttctttatcccatcggttcccctaggagccaacgataggttttcgaaatcatatattag 4856
Query: 288 ccgttgtttcttatagttatcgattcctatcgggtcaggactccttgacctcttcatctt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4857 ccgttgtttcttatagttatcgattcctatcgggtcaggactccttgacctcttcatctt 4916
Query: 348 gaagcctgatgacattgtatagctaataccttgctcattcgcagtgaactattctaagca 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4917 gaagcctgatgacattgtatagctaataccttgctcattcgcagtgaactattctaagca 4976
Query: 408 gatgatctgttcgctgctacttttgtaggtgttgtttcgtttgtcctaatttatcttatg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4977 gatgatctgttcgctgctacttttgtaggtgttgtttcgtttgtcctaatttatcttatg 5036
Query: 468 gccaaccgagaactttctggaagcttaaa-tgaagatcattagaaatgtttgtaaattca 526
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 5037 gccaaccgagaactttctggaagcttaaaatgaagatcattagaaatgtttgtaaattca 5096
Query: 527 cccgttaagaaagtttcgtagatgaagctgatactacaggtactggttatcttttttctt 586
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 5097 cccgttaagaaagtttcgtagatgaagctgatactacaggtactggttatcttttt-ctt 5155
Query: 587 ggtagatatctcttgatcgaaccttca-tattgccttta-taagcttttttcctttggtt 644
| |||||||||||||||||| |||||| ||||||||||| || |||||||| |||| |||
Sbjct: 5156 gttagatatctcttgatcgagccttcaatattgcctttaatatgctttttttcttttgtt 5215
Query: 645 cct-cta-gagaatagtatttgatcttcttattaattaagggtt-cgaatgtctttttca 701
|| ||| |||| ||||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 5216 tcttctaagagatatgtatttgatcttcttcataattaagggtttcgaatgtctttttca 5275
Query: 702 ttctggaaactttaattcacaacaacttgggttactttaacacacgttttaaaaaaaatt 761
| ||| || |||| |||||| |||||||| |||||| |||| ||||| ||| ||||| |
Sbjct: 5276 tactgaaacatttagttcacagcaacttggtttacttcaaca-acgttataagaaaaagt 5334
Query: 762 ttttaatttttttc-ctgccaactttgggaataatttttggacccgctcatgtttggcaa 820
|| | |||| | || ||| ||| ||| |||| || |||||||| |||||||| ||||||
Sbjct: 5335 ttatgatttctatcactg-caagcttgtgaatcatctttggacctgctcatgtatggcaa 5393
Query: 821 ttg 823
|||
Sbjct: 5394 ttg 5396
>3x_Contig38
Length = 925
Score = 894 bits (451), Expect = 0.0
Identities = 483/494 (97%), Gaps = 11/494 (2%)
Strand = Plus / Plus
Query: 48 taccacagatcgccagtcataccattttattacctgcgagttaaactgtcgtacatgatc 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 taccacagatcgccagtcataccattttattacctgcgagttaaactgtcgtacatgatc 159
Query: 108 gaatattctttcatatatcttatcatttttgtttgaaccactcaattcgcgttcaactac 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 gaatattctttcatatatcttatcatttttgtttgaaccactcaattcgcgttcaactac 219
Query: 168 atcccacatccttttatttacaactgctttgaatgagttcaaccctgaatcaattttatg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 atcccacatccttttatttacaactgctttgaatgagttcaaccctgaatcaattttatg 279
Query: 228 tttctttatcccatcggttcccctaggagccaacgataggttttcgaaatcatatattag 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tttctttatcccatcggttcccctaggagccaacgataggttttcgaaatcatatattag 339
Query: 288 ccgttgtttcttatagttatcgattcctatcgggtcaggactccttgacctcttcatctt 347
|||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 340 ccgttgtttcttatagttatcg----------ggtcaggactccttgacctcttcatctt 389
Query: 348 gaagcctgatgacattgtatagctaataccttgctcattcgcagtgaactattctaagca 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gaagcctgatgacattgtatagctaataccttgctcattcgcagtgaactattctaagca 449
Query: 408 gatgatctgttcgctgctacttttgtaggtgttgtttcgtttgtcctaatttatcttatg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gatgatctgttcgctgctacttttgtaggtgttgtttcgtttgtcctaatttatcttatg 509
Query: 468 gccaaccgagaactttctggaagctt-aaatgaagatcattagaaatgtttgtaaattca 526
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 510 gccaaccgagaactttctggaagcttaaaatgaagatcattagaaatgtttgtaaattca 569
Query: 527 cccgttaagaaagt 540
||||||||||||||
Sbjct: 570 cccgttaagaaagt 583
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8182
Number of Sequences: 1807
Number of extensions: 8182
Number of successful extensions: 97
Number of sequences better than 1.0e-20: 2
length of query: 905
length of database: 10,358,551
effective HSP length: 16
effective length of query: 889
effective length of database: 10,329,639
effective search space: 9183049071
effective search space used: 9183049071
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)