BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZE04FM1.SCF screened BAC_end
(954 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig927 1057 0.0
>3x_Contig927
Length = 3708
Score = 1057 bits (533), Expect = 0.0
Identities = 597/612 (97%), Gaps = 5/612 (0%)
Strand = Plus / Minus
Query: 88 ctttgcccaatctttcccatacaagttcattgttcaatttctcagcttcttcaagagcaa 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3246 ctttgcccaatctttcccatacaagttcattgttcaatttctcagcttcttcaagagcaa 3187
Query: 148 ctgtcaaattaccgtattgtgtagccaaatcaaatcttgtttgaggatcctccacgaatt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3186 ctgtcaaattaccgtattgtgtagccaaatcaaatcttgtttgaggatcctccacgaatt 3127
Query: 208 gtaacgcaatttcaggatagcctgatttttgaagataagatatgatgttttgaccaacta 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3126 gtaacgcaatttcaggatagcctgatttttgaagataagatatgatgttttgaccaacta 3067
Query: 268 aatttgaatttttaatgatacgcaatacctcagggaaatttttgttgactaaagtcttct 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3066 aatttgaatttttaatgatacgcaatacctcagggaaatttttgttgactaaagtcttct 3007
Query: 328 tgaaacgatattcagtaggatcaattgtcaaaatctctacttccccttcacgattcaaag 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3006 tgaaacgatattcagtaggatcaattgtcaaaatctctacttccccttcacgattcaaag 2947
Query: 388 catatacaaatttgccatgtaccttgttgatgtataatgttctttctaaggttttaatga 447
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2946 catagacaaatttgccatgtaccttgttgatgtataatgttctttctaaggttttaatga 2887
Query: 448 taccagaatcaccattcaatagacagtatttgatatggttcaatgttgaataaattanga 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 2886 taccagaatcaccattcaatagacagtatttgatatggttcaatgttgaataaattagga 2827
Query: 508 caccggtttcatcccaacttgcactcttgattctaatactttcatgggtttgatgtaacg 567
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 2826 caccggtttcatcccaacttgcactcttgattctaatactttcat-ggtttgatgtaacg 2768
Query: 568 atttccagtttttctggttgcgattgtcaatgtatgcttactcattaatgcaacatattg 627
|||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 2767 atttccag-ttttctgtttgcgattgtcaatgtatgcttactcatcaatgcaacatattg 2709
Query: 628 gcccatctttagaccac-ccggatacctggatggtctttaaagataattcatggagaatt 686
| ||||||| ||||||| | | ||| || |||| ||||||||||||||||||| ||||||
Sbjct: 2708 g-ccatcttgagaccacactgtata-cttgatgttctttaaagataattcatgaagaatt 2651
Query: 687 ttaccttgttgg 698
||||||||||||
Sbjct: 2650 ttaccttgttgg 2639
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8039
Number of Sequences: 1807
Number of extensions: 8039
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)