BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZE04RM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1741 1324 0.0
>3x_Contig1741
Length = 21706
Score = 1324 bits (668), Expect = 0.0
Identities = 769/794 (96%), Gaps = 7/794 (0%)
Strand = Plus / Plus
Query: 44 gcttattaagctcttctcgcttttaaacttgttctcagttctctttaaacctctgctaca 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7307 gcttattaagctcttctcgcttttaaacttgttctcagttctctttaaacctctgctaca 7366
Query: 104 aagttcagcaggaaggttagaccttactattaggatatatgtagtattaagttctctcac 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7367 aagttcagcaggaaggttagaccttactattaggatatatgtagtattaagttctctcac 7426
Query: 164 tttcacttacgaacaaatgcaatagtcccaaacttccgtaagtattcactcatcgcaagg 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7427 tttcacttacgaacaaatgcaatagtcccaaacttccgtaagtattcactcatcgcaagg 7486
Query: 224 ataaaaccgttcatgtacgtccaagttttatgtatatcaatatcttgttttttttccaat 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7487 ataaaaccgttcatgtacgtccaagttttatgtatatcaatatcttgttttttttccaat 7546
Query: 284 tctaatgtaacagaaataaagaaattcttggaagaaaattctcgttgcccagcagcagtg 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7547 tctaatgtaacagaaataaagaaattcttggaagaaaattctcgttgcccagcagcagtg 7606
Query: 344 ctttctgcttgagcctcaaaaagaaataagaccgattagcaccatagcaaagccaaggat 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7607 ctttctgcttgagcctcaaaaagaaataagaccgattagcaccatagcaaagccaaggat 7666
Query: 404 gggcacgtttaagggatacggacgcatagttcaattacaggctaacgaactgaatacgtg 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7667 gggcacgtttaagggatacggacgcatagttcaattacaggctaacgaactgaatacgtg 7726
Query: 464 acctagaaacctatattatcttcactagtttacgggtgattcttatcatttttctttttg 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7727 acctagaaacctatattatcttcactagtttacgggtgattcttatcatttttctttttg 7786
Query: 524 ttcagatgtcaattcggcagacgtatatttaacaatggaagaaagctntacatagagttc 583
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 7787 ttcagatgtcaattcggcagacgtatatttaacaatggaagaaagcttaacatagagttc 7846
Query: 584 tacacagtatagttcgcacagggtccaattcgaaag-aggggatttctgtacagatgtag 642
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 7847 tacacagtaaagttcgcacagggtccaattcgaaagaaggggatttctgtacagatgtag 7906
Query: 643 gtacacaggcatatctcatatata-tattacgcanaaaatattaaaggaatcaaaaacac 701
|||||||||||||||||||||||| ||| ||||| |||||||| ||||||||||||||||
Sbjct: 7907 gtacacaggcatatctcatatatattataacgcaaaaaatatt-aaggaatcaaaaacac 7965
Query: 702 t-cacaaagtctgatatggtccatttcaaacagatgatatttatcttggatgaatacgaa 760
| ||||||||||||||||||||||| |||||||||||||| ||||| | | ||||||||
Sbjct: 7966 tccacaaagtctgatatggtccattccaaacagatgatatatatctagaagaaatacgaa 8025
Query: 761 tacaaattat-ttttcccttgaaatgac-ttttcaaaaaactgtaccaattccg-ggaaa 817
|||||||||| | | | | ||||||||| | | ||||||||||||||||||||| | |||
Sbjct: 8026 tacaaattatatatacacatgaaatgacatatccaaaaaactgtaccaattccgagaaaa 8085
Query: 818 tcgatattcgatgt 831
||||||||||||||
Sbjct: 8086 tcgatattcgatgt 8099
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8418
Number of Sequences: 1807
Number of extensions: 8418
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)