BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZE05FM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1591 1336 0.0
>3x_Contig1591
Length = 14045
Score = 1336 bits (674), Expect = 0.0
Identities = 769/797 (96%), Gaps = 3/797 (0%)
Strand = Plus / Plus
Query: 90 cctattatcctaactgtcattttattaacttgggattgtatctatacaatgaactcccaa 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 cctattatcctaactgtcattttattaacttgggattgtatctatacaatgaactcccaa 735
Query: 150 tggaggtcccatttgaaaggtatcactgaacttttcaagaagatcaattcaggaaactca 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 tggaggtcccatttgaaaggtatcactgaacttttcaagaagatcaattcaggaaactca 795
Query: 210 tcaaaagtgctaaatgtcgcgaaatgttggtttaaggttatggagacttttgcaagtatt 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 tcaaaagtgctaaatgtcgcgaaatgttggtttaaggttatggagacttttgcaagtatt 855
Query: 270 attaccgtgctaggtggtgcacttgttgaggaaacagacttggacgcgatttttgatcca 329
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 agtaccgtgctaggtggtgcacttgttgaggaaacagacttggacgcgatttttgatcca 915
Query: 330 tacgatttcca-gtatgtcgagtcgttgaagtctctaaatatcacaacctcgttgaatga 388
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916 tacgatttccatgtatgtcgagtcgttgaagtctctaaatatcacaacctcgttgaatga 975
Query: 389 gttcaatcttttacggggtcacaacgaagagtttgatcttgttatcaaagaggtcttcaa 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 976 gttcaatcttttacggggtcacaacgaagagtttgatcttgttatcaaagaggtcttcaa 1035
Query: 449 aagtttgaacttgattaggtctttggagaagacaagcatggacgggaataaaggtggaat 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1036 aagtttgaacttgattaggtctttggagaagacaagcatggacgggaataaaggtggaat 1095
Query: 509 gatcaataaaaacatagactatttactcttctttgactctcactctgaagcctatatgaa 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1096 gatcaataaaaacatagactatttactcttctttgactctcactctgaagcctatatgaa 1155
Query: 569 caagctctcttatttcaagatacagataatcatcgtggaaattgataagcagcttgaata 628
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1156 caagctctcttatttcaagatacagaaaatcatcgtggaaattgataagcagcttgaata 1215
Query: 629 tcaattcattgacatatccggtgtaatacctgcagataatcaatcacattctttctacag 688
|||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 1216 tcaattcattgacaaatccggtgtaatacctgcagataatcaatcacatccttctaacag 1275
Query: 689 canaatactagatcatgcaatagatcttggtactcctaaaaatggagatgtcattgcgat 748
|| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 1276 caaaatactagatcatgcaatagatcttgttactctaaaaaatggagatgtcattgcgat 1335
Query: 749 aagctggtatgatatttctcatcaaa-ttaagttctattcttcttattggatggtttact 807
|||||||||||||||||||||||||| | ||||||||| ||||||||| || ||||||
Sbjct: 1336 aagctggtatgatatttctcatcaaactcaagttctatctttcttattgattgttttact 1395
Query: 808 aaaactacttggttatccaaaagagtccattgctgtccagcaag-tgtttaacggatcat 866
||||||||||||| ||||||||||||||||||||| ||||||| |||| | || |||||
Sbjct: 1396 aaaactacttggtattccaaaagagtccattgctgtacagcaagttgttaagcgtatcat 1455
Query: 867 ggccttattccaatttt 883
| ||||||||| |||||
Sbjct: 1456 gtccttattccgatttt 1472
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6761
Number of Sequences: 1807
Number of extensions: 6761
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)