BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZE05RM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig927 884 0.0
3x_Contig1262 359 7e-99
>3x_Contig927
Length = 3708
Score = 884 bits (446), Expect = 0.0
Identities = 446/446 (100%)
Strand = Plus / Plus
Query: 48 tgatccaaggtaacacagatatcgctgaattggtatatcaaaacactaagcagtttgata 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3253 tgatccaaggtaacacagatatcgctgaattggtatatcaaaacactaagcagtttgata 3312
Query: 108 aactgtctttcctatatctacttaagggagacaactccaaactggcaaaaatggagtcta 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3313 aactgtctttcctatatctacttaagggagacaactccaaactggcaaaaatggagtcta 3372
Query: 168 ttgctgaacatagatcagatatttccggcttgattcaaaataccttttacaataactcag 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3373 ttgctgaacatagatcagatatttccggcttgattcaaaataccttttacaataactcag 3432
Query: 228 ttcagaagcgtgcaaatgtctttttaaatgcaggctctgctcctttggcttatgcagtgg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3433 ttcagaagcgtgcaaatgtctttttaaatgcaggctctgctcctttggcttatgcagtgg 3492
Query: 288 caaaagctaacggcgacgatgaccttgccacttccattttggaatccgaagaaattgatg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3493 caaaagctaacggcgacgatgaccttgccacttccattttggaatccgaagaaattgatg 3552
Query: 348 agcaagacatttccctaccaactgaactcaactcctccacaaatgtaaaaacccctgtca 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3553 agcaagacatttccctaccaactgaactcaactcctccacaaatgtaaaaacccctgtca 3612
Query: 408 tttctgctcctttgaaaaactggccgttaaagcaagctgaagtctcattctttgaaaaag 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3613 tttctgctcctttgaaaaactggccgttaaagcaagctgaagtctcattctttgaaaaag 3672
Query: 468 cccttttgggccaaatcgaagatctt 493
||||||||||||||||||||||||||
Sbjct: 3673 cccttttgggccaaatcgaagatctt 3698
>3x_Contig1262
Length = 7137
Score = 359 bits (181), Expect = 7e-99
Identities = 285/312 (91%), Gaps = 7/312 (2%)
Strand = Plus / Plus
Query: 604 ggaagaagatgcttgggacctagacc-aaaatgatttggaattagacgacgagttagaga 662
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1 ggaagaagatgcttgggacctagacccaaaatgatttggaattagacgacgagttagaga 60
Query: 663 tcgaaga-tccgaagtgactgaagaaacagtagatgaatcagaattgcnncatgtgggtt 721
||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 61 tcgaagaatccgaagtgactgaagaacaagtagatgaatcagaattgcca-atgtgggtt 119
Query: 722 aaaaattcaaagctttcagcagttctagtagccgctggagcctttgatgctgctgcccca 781
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 120 aaaaattcaaagcttccagcagttctagtagccgctggagcctttgatgctgctgcccaa 179
Query: 782 gcccttgaattagcagttagccgttgtaaaacttcgaacccctcaggacaccattcattg 841
| |||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 180 g-ccttgaataagcaggtagccgttgt-aaacttcgaacccctcaggacaccattcattg 237
Query: 842 atttattacgatggntgcaggactnatatggagtgctacaccaaatgaatacccttcatt 901
|| || |||||||| || ||| |||| |||||||||||||||||||| |||||| |
Sbjct: 238 atata-tacgatggtgcaagaacttatat-gagtgctacaccaaatgaattaccttcaat 295
Query: 902 natgggatacat 913
|| ||||||||
Sbjct: 296 tattggatacat 307
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6928
Number of Sequences: 1807
Number of extensions: 6928
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 2
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)