BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC40ZE06FM1.SCF screened BAC_end
         (929 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1410                                                        1076   0.0  

>3x_Contig1410 
          Length = 7640

 Score = 1076 bits (543), Expect = 0.0
 Identities = 646/674 (95%), Gaps = 5/674 (0%)
 Strand = Plus / Plus

                                                                        
Query: 87   caaagatcgtcaagcgagaagttacctcgaacgaattatgtactagccggtctatccggg 146
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1975 caaagatcgtcaagcgagaagttacctcgaacgaattaggtactagccggtctatccggg 2034

                                                                        
Query: 147  aaaagcagtcctataagagatagaaattccgggactgtaacagaatgtaaacatgaaggg 206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2035 aaaagcagtcctataagagatagaaattccgggactgtaacagaatgtaaacatgaaggg 2094

                                                                        
Query: 207  gtttacgctgtaatagcagtgttcattttcccaccatgttgcatattcgggatgattact 266
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2095 gtttacgctgtaatagcagtgttcattttcccaccatgttgcatattcgggatgattact 2154

                                                                        
Query: 267  catattatcgagatttctttccatataaagagagataaagatggagcaaccactagtgga 326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2155 catattatcgagatttctttccatataaagagagataaagatggagcaaccactagtgga 2214

                                                                        
Query: 327  gaaaagggaaaatacaagatcagcttggaagaagtctacaaacggtatttgggaacagaa 386
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2215 gaaaagggaaaatacaagatcagcttggaagaagtctacaaacggtatttgggaacagaa 2274

                                                                        
Query: 387  accaaccggcaaggactgtctgactgtctgccctttctgcttgaaacttcctgtctgatt 446
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2275 accaaccggcaaggactgtctgactgtctgccctttctgcttgaaacttcctgtctgatt 2334

                                                                        
Query: 447  gaataccactgcaatgatcgtgacattaatagtcatcctaatcggcttgttgcattactt 506
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2335 gaataccactgcaatgatcgtgacattaatagtcatcctaatcggcttgttgcattactt 2394

                                                                        
Query: 507  cgtcatatacccattggtcttcagtccattgagttcacttactgggccgaaacatcctga 566
            |||||||||||||||||||||||||||||||||||||||  |||||||||||||||   |
Sbjct: 2395 cgtcatatacccattggtcttcagtccattgagttcactacctgggccgaaacatctgaa 2454

                                                                        
Query: 567  gttgagcagtttggttcatatttgacanggctcgtacggaacaacgtatggaatttttac 626
            ||||||||| ||||||||||||  ||| ||||||||||||||||||||  |||| |||||
Sbjct: 2455 gttgagcag-ttggttcatattgaacaaggctcgtacggaacaacgtaatgaatatttac 2513

                                                                        
Query: 627  -aagattgcatgataagtccggggatctagt-cagattggtccgaacgaggaagccttca 684
             |||||||||||| |||| |||||||||||| ||||| ||||||||||||| ||||||||
Sbjct: 2514 aaagattgcatgagaagtacggggatctagtacagataggtccgaacgaggtagccttca 2573

                                                                        
Query: 685  attcctttaagttccggaaacaaatttacctgggaaaatttccctacaagaatttcgaaa 744
            ||||||| |||| |  |||||| |||||| |||| ||||||||||||||| | |||||||
Sbjct: 2574 attccttcaagtacgtgaaacagatttacatggg-aaatttccctacaag-agttcgaaa 2631

                          
Query: 745  acaatggtgtgggg 758
            ||||||||||||||
Sbjct: 2632 acaatggtgtgggg 2645


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6198
Number of Sequences: 1807
Number of extensions: 6198
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)