BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZE06RM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1738 955 0.0
>3x_Contig1738
Length = 21411
Score = 955 bits (482), Expect = 0.0
Identities = 545/558 (97%), Gaps = 6/558 (1%)
Strand = Plus / Plus
Query: 49 aaacgctcttgtctgtgttttgtatgtgtgcttcctgtgtccattgtgataaaaattcat 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3216 aaacgctcttgtctgtgttttgtatgtgtgcttcctgtgtccattgtgataaaaattcat 3275
Query: 109 ttgacacacccaatgccatttgacacactctttttttaagtaccggtatccacattgtaa 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3276 ttgacacacccaatgccatttgacacactctttttttaagtaccggtatccacattgtaa 3335
Query: 169 agtaccactaccaccatctcatactcaacctcgccatctaatcaccctgtatcatgtccc 228
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 3336 agtaccactaccaccatcttatactcaacctcgccatctaatcaccctgtatcatgtccc 3395
Query: 229 gagtgttcacccgtctttatcatccaaataacttggaacacgccttgcccaagattatca 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3396 gagtgttcacccgtctttatcatccaaataacttggaacacgccttgcccaagattatca 3455
Query: 289 aacctttgacttatggcaccgattcagtgcaattcaaggtgttatcgaacgcattgaaca 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3456 aacctttgacttatggcaccgattcagtgcaattcaaggtgttatcgaacgcattgaaca 3515
Query: 349 aacatgtcccacagtacggatttaacgaaagagctattgtacaatctttgaatgaattgg 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3516 aacatgtcccacagtacggatttaacgaaagagctattgtacaatctttgaatgaattgg 3575
Query: 409 gaatgggatcctcatacctttcagtgcttggaagttctaattcgccatcattttttcaac 468
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 3576 gaatgggatcctcatacctttcagtgcttggaagttctaattcgccatca-tttttcaac 3634
Query: 469 gtgtcacctntctgttgcttgaactttgtgaaattccatctagtatcaaagcgttaccag 528
||||||||| |||| ||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 3635 gtgtcacct-tctg-tgcttgaac-ttgtgaaattccatctagtatcaaagcgtaaccag 3691
Query: 529 ttgattacagattttaccattggattccgattaaactttgccagatttggagaccttatt 588
||||||||||| ||||||||||||||||||| || |||||||||||||| |||| ||| |
Sbjct: 3692 ttgattacaga-tttaccattggattccgataaacctttgccagatttgaagacttta-t 3749
Query: 589 tcttgcaacggtggaaac 606
|||||||||||| |||||
Sbjct: 3750 tcttgcaacggttgaaac 3767
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9106
Number of Sequences: 1807
Number of extensions: 9106
Number of successful extensions: 75
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)