BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZE08FM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1358 1193 0.0
>3x_Contig1358
Length = 7912
Score = 1193 bits (602), Expect = 0.0
Identities = 704/729 (96%), Gaps = 7/729 (0%)
Strand = Plus / Minus
Query: 88 taaagaaatcaatgcagatttcaatgttataactggagtccatgcattctttaatatatc 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7471 taaagaaatcaatgcagatttcaatgttataactggagtccatgcattctttaatatatc 7412
Query: 148 aaggcaaatagcaccagttacagatgatacattgggatggtacacctttgtgtcaaactt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7411 aaggcaaatagcaccagttacagatgatacattgggatggtacacctttgtgtcaaactt 7352
Query: 208 catttggggtggtttatacggatattccacgggtatatttatatcaacgacgaatttacc 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7351 catttggggtggtttatacggatattccacgggtatatttatatcaacgacgaatttacc 7292
Query: 268 tccctcgtatggcgttccactagggccaatgaagctgcccttcatatgatggatatcaga 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7291 tccctcgtatggcgttccactagggccaatgaagctgcccttcatatgatggatatcaga 7232
Query: 328 ctcattgacaaactttaactcaatttgggcctctggatcctctttcaccgcttggatttc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7231 ctcattgacaaactttaactcaatttgggcctctggatcctctttcaccgcttggatttc 7172
Query: 388 cttcaaaattctcttcgaccttagcatcctgttagattaattggtaattcagtggcactt 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7171 cttcaaaattctcttcgaccttagcatcctgttagattaattggtaattcagtggcactt 7112
Query: 448 tcaaatgcacccgctccagttattgggtgtaataaaccgttctcgaaagatgtgataact 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7111 tcaaatgcacccgctccagttattgggtgtaataaaccgttctcgaaagatgtgataact 7052
Query: 508 atgaataagcacacgtatatatgtatgatcttttctttccatacattaatggatgttcaa 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7051 atgaataagcacacgtatatatgtatgatcttttctttccatacattaatggatgttcaa 6992
Query: 568 tcgtttgcatacagtatcatcaatgttaatgggatttgatataagaagtagaaactggtg 627
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 6991 tcgtttgcatacagtatcatcaatgttaatggtatttgatataagaagtagaaactggtg 6932
Query: 628 atgagggtaac-aagacatgttttcctttc-acataactga-tttaacatcacctattag 684
||||||||||| ||||||||||| |||||| |||||||||| || |||||||||||| ||
Sbjct: 6931 atgagggtaacaaagacatgtttccctttcaacataactgagttaaacatcacctataag 6872
Query: 685 attatagtacattgg-atatactggttcggtgggtatattaaatagaagg-tcacctatt 742
||||||||||||||| ||||||||||||| || |||||||| |||||||| |||| ||||
Sbjct: 6871 attatagtacattggtatatactggttcgttgtgtatattagatagaaggttcacgtatt 6812
Query: 743 ttttggttgaagaagaatncagaaagtttactttcatcggctttgttcccggaaatgcaa 802
| |||||||||| ||| ||| ||||| |||||||||| | ||||||| ||| |||||
Sbjct: 6811 atgtggttgaagaggaa-gcaggaagttgactttcatcgtc-ttgttccgcgaagtgcaa 6754
Query: 803 gaatgtgtg 811
|||||||||
Sbjct: 6753 gaatgtgtg 6745
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7345
Number of Sequences: 1807
Number of extensions: 7345
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)