BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZE08RM1.SCF screened BAC_end
(908 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1782 1255 0.0
>3x_Contig1782
Length = 24703
Score = 1255 bits (633), Expect = 0.0
Identities = 724/746 (97%), Gaps = 8/746 (1%)
Strand = Plus / Minus
Query: 44 gctttgacaaagtggtaatagttgctaacttccagcaaaacccaacgaaaagtatagata 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23516 gctttgacaaagtggtaatagttgctaacttccagcaaaacccaacgaaaagtatagata 23457
Query: 104 ttctggatattataaatcaatgcaatgagtatgtgaactctttgtttatttctcagctag 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23456 ttctggatattataaatcaatgcaatgagtatgtgaactctttgtttatttctcagctag 23397
Query: 164 agttcaagttacctttggttttttcacctggaacaagaagcagattaaaaatgcttgtat 223
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 23396 agttcaagttacctttggttttttcacctggaacaagaagcagattaaaaatgcatg-ag 23338
Query: 224 ggttcaataggtttggtttccaagtgtcttgacaactcacaaactgttacaccgtctatt 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23337 ggttcaataggtttggtttccaagtgtcttgacaactcacaaactgttacaccgtctatt 23278
Query: 284 gtcaagatcatatccaatgacaaaacatcaacaactgtgtttcagattttgaacgaaact 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23277 gtcaagatcatatccaatgacaaaacatcaacaactgtgtttcagattttgaacgaaact 23218
Query: 344 tcaaaaacgcgtgcaactcttgaaaaatacaaaaagcacaaataattggaataagttacc 403
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 23217 tcaaaaacgcgtgcaactcttgaaaaatacaaaa-gcacaaataattggaataagttacc 23159
Query: 404 acagatgttcgaagggacagataaggattaaacatttttaaatttgtattgcaaggctct 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23158 acagatgttcgaagggacagataaggattaaacatttttaaatttgtattgcaaggctct 23099
Query: 464 tagattacctaattcgaaatcaagacttgtcatgagcctcttcacgataaaggccactat 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23098 tagattacctaattcgaaatcaagacttgtcatgagcctcttcacgataaaggccactat 23039
Query: 524 gaataacaaatgtggaatatgacataataataacaaggcagtggaaccaccttgattaag 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23038 gaataacaaatgtggaatatgacataataataacaaggcagtggaaccaccttgattaag 22979
Query: 584 gatgatccatgataggaatattaacatgacanagttcanaatgttttaatctttggctgc 643
|||||||||||| |||||||||||||||||| |||||| |||| ||||||||||||||||
Sbjct: 22978 gatgatccatgaaaggaatattaacatgacaaagttcaaaatg-tttaatctttggctgc 22920
Query: 644 ttanatanaaattcatccttctaaactttg-aatagttgtgaatgaattcatatcgaaga 702
||| ||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 22919 ttaaataaaaattcatccttct-aactttgaaatagttgtgaatgaattcatatcgaaga 22861
Query: 703 agtatcacggagcagcttattgattgtgcggaanac-ataata-ttntctgtaaggtccc 760
|||||||||||||||||||||||||||||| || |||||| || |||||||||||||
Sbjct: 22860 gtaatcacggagcagcttattgattgtgcggaaaacaataatatttttctgtaaggtccc 22801
Query: 761 -atgnttcgttttttctctaaattct 785
||| |||||||||||||| ||||||
Sbjct: 22800 aatgtttcgttttttctcttaattct 22775
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7128
Number of Sequences: 1807
Number of extensions: 7128
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)