BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC40ZE09RM1.SCF screened BAC_end
         (917 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1564                                                         999   0.0  

>3x_Contig1564 
          Length = 11038

 Score =  999 bits (504), Expect = 0.0
 Identities = 640/675 (94%), Gaps = 8/675 (1%)
 Strand = Plus / Plus

                                                                        
Query: 44   gcttagatctcaatgcaagttctatcatgacaggatgctttttttcttcgttc-caaatt 102
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 2254 gcttagatctcaatgcaagttctatcatgacaggatgctttttttcttcgttcacaaatt 2313

                                                                        
Query: 103  ttgatttgatttgccgccttgacctataaggaaacagttgagatattagattgaaatctg 162
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2314 ttgatttgatttgccgccttgacctataaggaaacagttgagatattagattgaaatctg 2373

                                                                        
Query: 163  tcccccacattgataacgcctgataaaacttgatcatttcttcaatagtccatggatctg 222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2374 tcccccacattgataacgcctgataaaacttgatcatttcttcaatagtccatggatctg 2433

                                                                        
Query: 223  taaactgctgacgaccgtacgtagcagaattgtataaattttcgaatggattgttctgaa 282
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2434 taaactgctgacgaccgtacgtagcagaattgtataaattttcgaatggattgttctgaa 2493

                                                                        
Query: 283  ttttttctttagatgaattttcaagagacgcgttcttatgtctgtcgacaaccatagatt 342
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2494 ttttttctttagatgaattttcaagagacgcgttcttatgtctgtcgacaaccatagatt 2553

                                                                        
Query: 343  cctcatcaacaaccatagatccatctngcggccatcttcaattgaataccttgatggggt 402
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 2554 cctcatcaacaaccatagatccatct-gcggccatcttcaattgaataccttgatggggt 2612

                                                                        
Query: 403  ttctcatctggcacttccgtatcaaaaagatcctgagcggctttctttctttcctctttc 462
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 2613 ttctcatctggcacttccgtatcaaaaagatcctgggcggctttctttctttcctctttc 2672

                                                                        
Query: 463  aattgtttttcttcttccgttactagttcattcaaggggactgactcttttctagccatt 522
            |||||||||||||||||||||||||||||||||||||      |||||||||||||||||
Sbjct: 2673 aattgtttttcttcttccgttactagttcattcaaggacttgaactcttttctagccatt 2732

                                                                        
Query: 523  tctcgtagttcccctgcgttttctttncctttaatcctttagctgggca-cttcctttac 581
            |||||||||| ||||||||||||||  ||||| |  |||||||| |||| ||||| ||| 
Sbjct: 2733 tctcgtagtt-ccctgcgttttcttctcctttcaatctttagcttggcagcttcc-ttag 2790

                                                                        
Query: 582  ccctgct-aaattctcagatatttcacctat-ggaagcgttgggttacattagtccgcca 639
            ||||||| ||||||||||||||||||||||| ||||||||||| ||||||  ||||||||
Sbjct: 2791 ccctgctaaaattctcagatatttcacctatgggaagcgttggtttacataggtccgcca 2850

                                                                        
Query: 640  taataaaagtttcttcgtctatcaagtatttggatgaaattttttcccctttttttcttt 699
            || ||||  |||||||||||||||||||||||||||||  ||| ||| | | ||||||||
Sbjct: 2851 tagtaaagttttcttcgtctatcaagtatttggatgaatctttgtccgc-tattttcttt 2909

                           
Query: 700  ggaaacattttcaaa 714
            |||| ||| ||||||
Sbjct: 2910 ggaatcatcttcaaa 2924


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,080
Number of Sequences: 1807
Number of extensions: 10080
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)