BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZE10FM1.SCF screened BAC_end
(987 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig187 928 0.0
>3x_Contig187
Length = 1332
Score = 928 bits (468), Expect = 0.0
Identities = 493/500 (98%), Gaps = 1/500 (0%)
Strand = Plus / Plus
Query: 87 ctttatcataaatgacccatcaacacctttatccgccccgactaatagaatattggagcg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 ctttatcataaatgacccatcaacacctttatccgccccgactaatagaatattggagcg 648
Query: 147 agtattcttcgagaggaagtcacttatttcccagggttgttctttcatgattgtcaagat 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 agtattcttcgagaggaagtcacttatttcccagggttgttctttcatgattgtcaagat 708
Query: 207 catttgtgataatccatctttcgcatctccgacaagtaaaccctccttaaactcagtaaa 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 catttgtgataatccatctttcgcatctccgacaagtaaaccctccttaaactcagtaaa 768
Query: 267 tcgttcggatagttgcggttgcgtcctgagaaggtctatattcgatctgatcattttcca 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 tcgttcggatagttgcggttgcgtcctgagaaggtctatattcgatctgatcattttcca 828
Query: 327 ctcttcgactgttcgtgtactttccattgaatacatctggagttccattaaacgtgcggc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 ctcttcgactgttcgtgtactttccattgaatacatctggagttccattaaacgtgcggc 888
Query: 387 aaaagagagcctatcattctctaaaaacattgggccaaaagcacaaaacattaagcggat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889 aaaagagagcctatcattctctaaaaacattgggccaaaagcacaaaacattaagcggat 948
Query: 447 tagtacagacaaaattttattcggtttattgggcttgctgttaacaagttcgtctgattt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 949 tagtacagacaaaattttattcggtttattgggcttgctgttaacaagttcgtctgaatt 1008
Query: 507 ttc-agtacgtaccgaaatactgtcaaaaactcattcacttcaacattataaaaccattg 565
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 1009 ttcaagtacgtaccgaaatactgtcaaaaactcattcacttcaacatcataaaaccaatt 1068
Query: 566 ctttttgatacccacccatt 585
|||||| |||| ||||||||
Sbjct: 1069 cttttttatactcacccatt 1088
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8347
Number of Sequences: 1807
Number of extensions: 8347
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 987
length of database: 10,358,551
effective HSP length: 16
effective length of query: 971
effective length of database: 10,329,639
effective search space: 10030079469
effective search space used: 10030079469
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)