BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZE11FM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1456 1114 0.0
>3x_Contig1456
Length = 10138
Score = 1114 bits (562), Expect = 0.0
Identities = 621/634 (97%), Gaps = 5/634 (0%)
Strand = Plus / Plus
Query: 88 attttttgtttcc-gtagagattctaaatctgagattctcgactttaaggcgtctatctc 146
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7051 attttttgtttccagtagagattctaaatctgagattctcgactttaaggcgtctatctc 7110
Query: 147 ggactttaatttctctgcctttgtatcggcattttgcttaatgttagaaatctcagattt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7111 ggactttaatttctctgcctttgtatcggcattttgcttaatgttagaaatctcagattt 7170
Query: 207 caaatctttaatttcagctaccttttcttcatttgaagcttccaataattttatcttgtc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7171 caaatctttaatttcagctaccttttcttcatttgaagcttccaataattttatcttgtc 7230
Query: 267 atttgattcttcggatatttgcatgatctcattgtttaaagaagaaatcttatcttgaag 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7231 atttgattcttcggatatttgcatgatctcattgtttaaagaagaaatcttatcttgaag 7290
Query: 327 tccttgacaggaatctgctttttcctgtaattcctgttgatagttgcaaagttcttcatt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7291 tccttgacaggaatctgctttttcctgtaattcctgttgatagttgcaaagttcttcatt 7350
Query: 387 tatcttattattctgtttcaatagttcatccttctcagcaagtaccgattgcaattcatc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7351 tatcttattattctgtttcaatagttcatccttctcagcaagtaccgattgcaattcatc 7410
Query: 447 attgatagcaattactgagtcatttaactcctcaatggtctcatccgaattgtcagtgga 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7411 attgatagcaattactgagtcatttaactcctcaatggtctcatccgaattgtcagtgga 7470
Query: 507 ctgttttgcgctttct-aagatgattcgagctc-atacattt-acattcagagcatgtag 563
|||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 7471 ctgttttgcgctttctaaagatgattcgagctcaatacatttcacattcagagcatgtag 7530
Query: 564 agagttcttcaattcttcgttgggtggtttggactcttttatctgtcgttcacattcgtc 623
||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||
Sbjct: 7531 agagttcttcaattcttcgttggttgttttgtactcttttatctgtcgttcacattcgtc 7590
Query: 624 aagtttggtttgtagcgatataatggattcgcttttactggtattttctgaccgtaactt 683
|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 7591 aagtttggtttgtagcgatataatggattcgcttttactgttattttctgacgttaactt 7650
Query: 684 tggagtatgaaccgtcaaaattttccttttcctt 717
| ||||||| | ||||||||||||||||||||||
Sbjct: 7651 ttgagtatg-agcgtcaaaattttccttttcctt 7683
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,287
Number of Sequences: 1807
Number of extensions: 10287
Number of successful extensions: 174
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)