BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZE11RM1.SCF screened BAC_end
(903 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1542 1352 0.0
>3x_Contig1542
Length = 13810
Score = 1352 bits (682), Expect = 0.0
Identities = 762/781 (97%), Gaps = 6/781 (0%)
Strand = Plus / Plus
Query: 44 gcttgtggaacgggagtaggacatgcacccgttctatttacacagtcagctctcttcagt 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12266 gcttgtggaacgggagtaggacatgcacccgttctatttacacagtcagctctcttcagt 12325
Query: 104 attttcaacttaaaattgcaatcttctaactcaacgttttcctcagtatcaattataaat 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12326 attttcaacttaaaattgcaatcttctaactcaacgttttcctcagtatcaattataaat 12385
Query: 164 atagagtacgaatatatacagtgaccaaaataaatctgatgttgcatttacaagttatta 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 12386 atagagtacgaatatatacagtgaccaaaataaatctgatgttgcatttacaagttaaga 12445
Query: 224 taccatactgttggtatacccaacagaatatgctgctttcagcatgtcaattagaagaaa 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12446 taccatactgttggtatacccaacagaatatgctgctttcagcatgtcaattagaagaaa 12505
Query: 284 aatgctgacgaccacaaaaagccggttataatggtgactaccttggtaaaccaccatata 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12506 aatgctgacgaccacaaaaagccggttataatggtgactaccttggtaaaccaccatata 12565
Query: 344 tgctgaatggaaaatggacataaattgaaactccattcccattgtcttgttgcttcgttg 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12566 tgctgaatggaaaatggacataaattgaaactccattcccattgtcttgttgcttcgttg 12625
Query: 404 aaatgacctgttactagaccagtgtttccatggtattctcccatcatcgaccttacagta 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12626 aaatgacctgttactagaccagtgtttccatggtattctcccatcatcgaccttacagta 12685
Query: 464 atttctttgatatttagattttttggatctgttgttttggatgcagtccaattgcctttg 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12686 atttctttgatatttagattttttggatctgttgttttggatgcagtccaattgcctttg 12745
Query: 524 tcatctttgttatagacagtttcgcaaccttcatgatcgtgacctgtcaaaatgatacca 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12746 tcatctttgttatagacagtttcgcaaccttcatgatcgtgacctgtcaaaatgatacca 12805
Query: 584 ngtttttcagcatcaaatattaagtttaagtaccctgttagaagcttcagcactcaaatg 643
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 12806 ggtttttcagcatcaaatattaag-ttaagtaccctgttagaagcttcagcactcaaatg 12864
Query: 644 gttttgtgatctcaatagctggggactgtaaggctctctctggtaatcttctgggtagta 703
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 12865 gttttgtgatctcaatagcttggacttgtaaggctctctctggtaatcttctgggtagta 12924
Query: 704 tctgaattctgggccatcgttaca-agtccagatggc-tataaaa-ggtttgtgagtgag 760
|||||||||||||||||||| ||| |||||||||||| ||||||| ||| ||||||||||
Sbjct: 12925 tctgaattctgggccatcgtaacacagtccagatggcttataaaatggtatgtgagtgag 12984
Query: 761 caataccggacta-ctttgaaattccttt-aaataattgggataaaaattcccaattggt 818
|||||||| |||| ||| ||| ||||||| |||||||||| |||||||||||||||||||
Sbjct: 12985 caataccgtactaccttcgaatttcctttcaaataattggtataaaaattcccaattggt 13044
Query: 819 t 819
|
Sbjct: 13045 t 13045
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6880
Number of Sequences: 1807
Number of extensions: 6880
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 903
length of database: 10,358,551
effective HSP length: 16
effective length of query: 887
effective length of database: 10,329,639
effective search space: 9162389793
effective search space used: 9162389793
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)