BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC40ZE12FM1.SCF screened BAC_end
         (920 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1610                                                        1116   0.0  

>3x_Contig1610 
          Length = 13981

 Score = 1116 bits (563), Expect = 0.0
 Identities = 615/631 (97%), Gaps = 1/631 (0%)
 Strand = Plus / Minus

                                                                        
Query: 88   ggaataagcaaaaaataagaaaaagctgtgtagcatcttgtaaagcgcgtttgtgctacg 147
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3273 ggaataagcaaaaaataagaaaaagctgtgtagcatcttgtaaagcgcgtttgtgctacg 3214

                                                                        
Query: 148  atttggagtggaatcagatggaaagtaaaagagtctgttacccggatatattgcctagaa 207
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3213 atttggagtggaatcagatggaaagtaaaagagtctgttacccggatatattgcctagaa 3154

                                                                        
Query: 208  aacaatgtatgaaccccataaatgaagagaaaaatagggatcgtgctcctgtttaacgga 267
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3153 aacaatgtatgaaccccataaatgaagagaaaaatagggatcgtgctcctgtttaacgga 3094

                                                                        
Query: 268  gggtaacttatatactgctagggaagaaagaattttttgccactcaactgcaaatagccg 327
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3093 gggtaacttatatactgctagggaagaaagaattttttgccactcaactgcaaatagccg 3034

                                                                        
Query: 328  ggtaaatagttggcgttagcttgttcacgtgacttgtaattcgtgtttcaaaccgagtaa 387
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3033 ggtaaatagttggcgttagcttgttcacgtgacttgtaattcgtgtttcaaaccgagtaa 2974

                                                                        
Query: 388  taagggtattatcattagctatatggatcaaggataatatatatgtagatatagatagtt 447
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2973 taagggtattatcattagctatatggatcaaggataatatatatgtagatatagatagtt 2914

                                                                        
Query: 448  agttagatgatgcaataacttgcgagaccatccagctctatggggcgtatttcttgatca 507
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2913 agttagatgatgcaataacttgcgagaccatccagctctatggggcgtatttcttgatca 2854

                                                                        
Query: 508  attggtcaaccaattcgatgtactgttgttcggcatcttcttgagaagtgcccttc-aca 566
            ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 2853 attggtcaaccaattcgatgtactgttgttcggcatcttcttgggaagtgcccttcaaca 2794

                                                                        
Query: 567  atttccaggcgttccacttgttacggtcctttcagttgaacatgcctggtttttccttgg 626
            ||| |||||||| |||||||| |||||||||  |||||||||||||||||||||||||||
Sbjct: 2793 attcccaggcgtcccacttgtaacggtccttcaagttgaacatgcctggtttttccttgg 2734

                                                                        
Query: 627  tgttgtcaccgacggttgcttgcttgtatttaacattcaatttcaacatttcatcgttat 686
            |||||||||||||||||||||||||||||  | ||| ||||||||||| |||||||||||
Sbjct: 2733 tgttgtcaccgacggttgcttgcttgtatagagcatacaatttcaacaattcatcgttat 2674

                                           
Query: 687  ttggatttgagggcaattaattggcagcttt 717
            ||||| |||| ||||||| |||| |||||||
Sbjct: 2673 ttggagttgatggcaattcattgacagcttt 2643


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7939
Number of Sequences: 1807
Number of extensions: 7939
Number of successful extensions: 74
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)