BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC40ZE12FM1.SCF screened BAC_end (920 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1610 1116 0.0 >3x_Contig1610 Length = 13981 Score = 1116 bits (563), Expect = 0.0 Identities = 615/631 (97%), Gaps = 1/631 (0%) Strand = Plus / Minus Query: 88 ggaataagcaaaaaataagaaaaagctgtgtagcatcttgtaaagcgcgtttgtgctacg 147 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3273 ggaataagcaaaaaataagaaaaagctgtgtagcatcttgtaaagcgcgtttgtgctacg 3214 Query: 148 atttggagtggaatcagatggaaagtaaaagagtctgttacccggatatattgcctagaa 207 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3213 atttggagtggaatcagatggaaagtaaaagagtctgttacccggatatattgcctagaa 3154 Query: 208 aacaatgtatgaaccccataaatgaagagaaaaatagggatcgtgctcctgtttaacgga 267 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3153 aacaatgtatgaaccccataaatgaagagaaaaatagggatcgtgctcctgtttaacgga 3094 Query: 268 gggtaacttatatactgctagggaagaaagaattttttgccactcaactgcaaatagccg 327 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3093 gggtaacttatatactgctagggaagaaagaattttttgccactcaactgcaaatagccg 3034 Query: 328 ggtaaatagttggcgttagcttgttcacgtgacttgtaattcgtgtttcaaaccgagtaa 387 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3033 ggtaaatagttggcgttagcttgttcacgtgacttgtaattcgtgtttcaaaccgagtaa 2974 Query: 388 taagggtattatcattagctatatggatcaaggataatatatatgtagatatagatagtt 447 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2973 taagggtattatcattagctatatggatcaaggataatatatatgtagatatagatagtt 2914 Query: 448 agttagatgatgcaataacttgcgagaccatccagctctatggggcgtatttcttgatca 507 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2913 agttagatgatgcaataacttgcgagaccatccagctctatggggcgtatttcttgatca 2854 Query: 508 attggtcaaccaattcgatgtactgttgttcggcatcttcttgagaagtgcccttc-aca 566 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| Sbjct: 2853 attggtcaaccaattcgatgtactgttgttcggcatcttcttgggaagtgcccttcaaca 2794 Query: 567 atttccaggcgttccacttgttacggtcctttcagttgaacatgcctggtttttccttgg 626 ||| |||||||| |||||||| ||||||||| ||||||||||||||||||||||||||| Sbjct: 2793 attcccaggcgtcccacttgtaacggtccttcaagttgaacatgcctggtttttccttgg 2734 Query: 627 tgttgtcaccgacggttgcttgcttgtatttaacattcaatttcaacatttcatcgttat 686 ||||||||||||||||||||||||||||| | ||| ||||||||||| ||||||||||| Sbjct: 2733 tgttgtcaccgacggttgcttgcttgtatagagcatacaatttcaacaattcatcgttat 2674 Query: 687 ttggatttgagggcaattaattggcagcttt 717 ||||| |||| ||||||| |||| ||||||| Sbjct: 2673 ttggagttgatggcaattcattgacagcttt 2643 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7939 Number of Sequences: 1807 Number of extensions: 7939 Number of successful extensions: 74 Number of sequences better than 1.0e-20: 1 length of query: 920 length of database: 10,358,551 effective HSP length: 16 effective length of query: 904 effective length of database: 10,329,639 effective search space: 9337993656 effective search space used: 9337993656 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)