BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZE12RM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1354 1059 0.0
>3x_Contig1354
Length = 7778
Score = 1059 bits (534), Expect = 0.0
Identities = 648/672 (96%), Gaps = 11/672 (1%)
Strand = Plus / Plus
Query: 46 taccttcagg-tctattgtatcgacaatacttattaccaccgacagcatatgaaaaagaa 104
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6058 taccttcagggtctagtgtatcgacaatacttattaccaccgacagcatatgaaaaagaa 6117
Query: 105 taataatagaaataaacaatatatagcaactgtaacagagattgatgagtgggtgggtgg 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6118 taataatagaaataaacaatatatagcaactgtaacagagattgatgagtgggtgggtgg 6177
Query: 165 gtcggaagggaaaaaggaagagacatcgggctgagaccagaagagccagattaggaaaat 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6178 gtcggaagggaaaaaggaagagacatcgggctgagaccagaagagccagattaggaaaat 6237
Query: 225 aaaacgaaaggctagaatagaaaacacaatttacataccgaaaaactggcgcacggcaat 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6238 aaaacgaaaggctagaatagaaaacacaatttacataccgaaaaactggcgcacggcaat 6297
Query: 285 acgcaatctctcgtaccacacctgagagtaaaacgcctttcgatcaccttaactcccgtg 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6298 acgcaatctctcgtaccacacctgagagtaaaacgcctttcgatcaccttaactcccgtg 6357
Query: 345 tcccttttcaacatcactcatgcatatattggatatttaaatctggtcttgcatctgcca 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6358 tcccttttcaacatcactcatgcatatattggatatttaaatctggtcttgcatctgcca 6417
Query: 405 ctccaaactggaaacagagtgaaaccagccataattcacaatcggccgatccagcaagac 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6418 ctccaaactggaaacagagtgaaaccagccataattcacaatcggccgatccagcaagac 6477
Query: 465 atttcgtactcttgaggaactgttgatgatctaaggcaccaccgagatgaactncgtgcc 524
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 6478 atttcgtactcttgaggaactgttgatgatctaaggcaccaccgagatgaactcggtgcc 6537
Query: 525 cctcacttcaagcgctcttctttaatttctgtgctgcgttgaagagttggntcttttttt 584
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 6538 cctcacttcaagcgctcttctttaatttctgtgctgcgttgaagagttggttcttttttt 6597
Query: 585 -tcagc-aaaatctg-gctttaaag-tctgggcatggggagttc-tctcaaacttttttg 639
||||| |||||||| |||| ||| |||||||||||||||||| ||||||| ||||||
Sbjct: 6598 ctcagcaaaaatctgtgcttagaagttctgggcatggggagttcttctcaaagctttttg 6657
Query: 640 c-ggtttttg-caccgtt-catgcccaggg-tttaagcttgctgga-ttttttcgaacaa 694
| |||||||| ||||||| ||||| ||||| |||||||||||| || ||||| |||||||
Sbjct: 6658 cgggtttttgccaccgttccatgcacagggttttaagcttgcttgagtttttccgaacaa 6717
Query: 695 gggtttgtaaaa 706
|| ||||||||
Sbjct: 6718 agggttgtaaaa 6729
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7081
Number of Sequences: 1807
Number of extensions: 7081
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)