BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZF01FM1.SCF screened BAC_end
(962 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig410 1084 0.0
>3x_Contig410
Length = 1641
Score = 1084 bits (547), Expect = 0.0
Identities = 606/623 (97%), Gaps = 2/623 (0%)
Strand = Plus / Minus
Query: 86 caaagcaacagcctcgtgtctgctttgcaaccaattagctattagtggtaagaactgggg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1596 caaagcaacagcctcgtgtctgctttgcaaccaattagctattagtggtaagaactgggg 1537
Query: 146 gatggagttaggatccttcaaaaccaattggtgcacgaatttaaccatttgtacttgagc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1536 gatggagttaggatccttcaaaaccaattggtgcacgaatttaaccatttgtacttgagc 1477
Query: 206 caattgatttttcaatggtgaagaatgaccggcaaactgttggatcaatttgatcaaagc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1476 caattgatttttcaatggtgaagaatgaccggcaaactgttggatcaatttgatcaaagc 1417
Query: 266 catcttatcgtgattcttcaattggtacaacaaacccaatgcatggtattgagagatatg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1416 catcttatcgtgattcttcaattggtacaacaaacccaatgcatggtattgagagatatg 1357
Query: 326 agacgtagttggataatatctactgttctcatctggatatggcaactgtttcaaatcacc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1356 agacgtagttggataatatctactgttctcatctggatatggcaactgtttcaaatcacc 1297
Query: 386 aacggcttcctgagtctcattagcaaatctcttcaccgtagtttcagcgattggtaataa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1296 aacggcttcctgagtctcattagcaaatctcttcaccgtagtttcagcgattggtaataa 1237
Query: 446 atggtatgaactgaccaaagaagcagaacaaatagatggatgtttgctaaccaacgaatt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1236 atggtatgaactgaccaaagaagcagaacaaatagatggatgtttgctaaccaacgaatt 1177
Query: 506 tttcaataatcttttctgcagaaaatgcagtggactcattcaagacacggatcaatgctc 565
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1176 tttcaataatc-tttctgcagaaaatgcagtggactcatccaagacacggatcaatgctc 1118
Query: 566 ttattacattatgcttcactagatctgaaccattttgaacatcttttcataattgaagaa 625
| || ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1117 taatagcattaggcttcactagatctgaaccattttgaacatc-tttcataattgaagaa 1059
Query: 626 gttgccatcaagatttattcggagattccacacaatttctttatatccacgtaaacgatt 685
|| ||||||||||| | ||||||||||||||||||| ||| ||| ||||||||||||||
Sbjct: 1058 gtagccatcaagatatcatcggagattccacacaattccttaatagccacgtaaacgatt 999
Query: 686 tgtcttaaagaatctgtagggtg 708
||||| |||||||| |||||||
Sbjct: 998 tgtctcaaagaatcgttagggtg 976
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,102
Number of Sequences: 1807
Number of extensions: 10102
Number of successful extensions: 140
Number of sequences better than 1.0e-20: 1
length of query: 962
length of database: 10,358,551
effective HSP length: 16
effective length of query: 946
effective length of database: 10,329,639
effective search space: 9771838494
effective search space used: 9771838494
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)