BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZF01RM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1744 1160 0.0
>3x_Contig1744
Length = 24119
Score = 1160 bits (585), Expect = 0.0
Identities = 638/653 (97%), Gaps = 2/653 (0%)
Strand = Plus / Plus
Query: 45 ctttgttgaaggaagacgcttattcctatccaccaggttgttaatttttctgaaaagtaa 104
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 13074 ctttgttgaaggaagacgcttaaacctatccaccaggttgttaatttttctgaaaagtaa 13133
Query: 105 atatctcatttatcaatatctctttgtgtcttaagttgttaattcgcacatcgtgcacat 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13134 atatctcatttatcaatatctctttgtgtcttaagttgttaattcgcacatcgtgcacat 13193
Query: 165 aagcacacccatgactatcactttatttagtactcttttttaccaatattattacattta 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 13194 aagcacacccatgactatcactttatttagtactcttttttaccaatattattacatcta 13253
Query: 225 gttttagttttccaaaccgattaatattaatttgggtcttaattgaaagatgaaagaggg 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13254 gttttagttttccaaaccgattaatattaatttgggtcttaattgaaagatgaaagaggg 13313
Query: 285 agtcaagcaacatatgtgattgattgatttgtatggttcttcatgatgctgttgtactga 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13314 agtcaagcaacatatgtgattgattgatttgtatggttcttcatgatgctgttgtactga 13373
Query: 345 attgcaacatataaactcaactatctttatatcttcatgtactttaatatttcactgaac 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13374 attgcaacatataaactcaactatctttatatcttcatgtactttaatatttcactgaac 13433
Query: 405 taaattgaaataattcataattaaccggtatattttcttgcttacttgaattatttacac 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13434 taaattgaaataattcataattaaccggtatattttcttgcttacttgaattatttacac 13493
Query: 465 gattcatactgttcgtttaaataagccactccatccagcggagtgggttttaattatgta 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13494 gattcatactgttcgtttaaataagccactccatccagcggagtgggttttaattatgta 13553
Query: 525 gtttccttgctttgtgttattacccagctatcgaatatacgcctgtctgttgatatttta 584
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 13554 gtttccttgctttgtgttataacccagctatcgaatatacgcctgtctgttgatatttta 13613
Query: 585 t-accgcatcgtgatacaatggccaataatgtagtggagtgattttaaagtgacttttcg 643
| ||||||||||||||||||||| ||||||| ||| |||||| | ||||||||||||||
Sbjct: 13614 tcaccgcatcgtgatacaatggcaaataatgaggtgaagtgatatcaaagtgacttttcg 13673
Query: 644 ctattggagg-aacaaaacatgtcctacatttgggtatgcattacttgcgtaa 695
|||||||||| ||||||||||||| |||||||| |||||||| ||||||||||
Sbjct: 13674 ctattggaggaaacaaaacatgtcttacatttgtgtatgcataacttgcgtaa 13726
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,554
Number of Sequences: 1807
Number of extensions: 13554
Number of successful extensions: 149
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)