BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZF02RM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1633 1185 0.0
>3x_Contig1633
Length = 12594
Score = 1185 bits (598), Expect = 0.0
Identities = 653/669 (97%), Gaps = 2/669 (0%)
Strand = Plus / Minus
Query: 60 atggtattgatcccctatgttgaacaaaagaagtgtatttatcactatcaaaaaaacctc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9528 atggtattgatcccctatgttgaacaaaagaagtgtatttatcactatcaaaaaaacctc 9469
Query: 120 ttgcaggggagtgaaatgatgtaaggctcatgtcagctacaatctgctcggtttccactt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9468 ttgcaggggagtgaaatgatgtaaggctcatgtcagctacaatctgctcggtttccactt 9409
Query: 180 catttgccacataacccttattgttaacacctcttttcaaaaatctagctcctgcaaaat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9408 catttgccacataacccttattgttaacacctcttttcaaaaatctagctcctgcaaaat 9349
Query: 240 aatgggatcttctaccaattagtgtgatataaatactcttaccgaatagtgaaacattga 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9348 aatgggatcttctaccaattagtgtgatataaatactcttaccgaatagtgaaacattga 9289
Query: 300 cttggtcaatgaacccatgaataatgggttgaaaccaatcatatacggtatcaatacatg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9288 cttggtcaatgaacccatgaataatgggttgaaaccaatcatatacggtatcaatacatg 9229
Query: 360 agaaaatgggatcaagcaagtatgaattccacataaacatttcgttataatcaggaatgc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9228 agaaaatgggatcaagcaagtatgaattccacataaacatttcgttataatcaggaatgc 9169
Query: 420 caggcggcacttcgatatctgacctcccaacggacagaaacttctgtctcagtatgtttg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9168 caggcggcacttcgatatctgacctcccaacggacagaaacttctgtctcagtatgtttg 9109
Query: 480 tttgtaatgtattagtaatatcaaaagtgtaactgaaataaaaagtttttgataatttaa 539
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 9108 tttgtaatgtattagtaatatcaaaagtgtaactgaaataaaaggtttttgataatttaa 9049
Query: 540 gattctggaatgattgtataaatcgaagttcggtggaatcccgtttcttcgttgactttg 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9048 gattctggaatgattgtataaatcgaagttcggtggaatcccgtttcttcgttgactttg 8989
Query: 600 ttatcggaactaattctgtatcgncgatatgataaatagattgaccttccag-acggcaa 658
||||||||||||||||||||||| |||||||||||||||| |||||| | || |||||||
Sbjct: 8988 ttatcggaactaattctgtatcgtcgatatgataaatagagtgacctccgagaacggcaa 8929
Query: 659 actgactcattttagttattacc-ccaaattattacatgctgggaaacttattacttccc 717
||||||||||| |||||||||| |||||| || |||||||| ||| || |||||| ||
Sbjct: 8928 cctgactcatttcagttattaccaccaaataataacatgctgtgaacctaattactccca 8869
Query: 718 ataaaccat 726
|||||||||
Sbjct: 8868 ataaaccat 8860
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7167
Number of Sequences: 1807
Number of extensions: 7167
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)