BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZF03FM1.SCF screened BAC_end
(953 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1541 1148 0.0
>3x_Contig1541
Length = 10565
Score = 1148 bits (579), Expect = 0.0
Identities = 630/643 (97%), Gaps = 3/643 (0%)
Strand = Plus / Plus
Query: 89 agccatttccatattaagccagtcgttactcctataaaacacatcttcgatttccttatg 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7215 agccatttccatattaagccagtcgttactcctataaaacacatcttcgatttccttatg 7274
Query: 149 ccctttcagcatgacatcattgaactcattgagtgattccacaatagatcgcgaaccacc 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7275 ccctttcagcatgacatcattgaactcattgagtgattccacaatagatcgcgaaccacc 7334
Query: 209 cgtttggttcttgagcttctttttggcagcctttaaagcccaatccatcgtttaaattca 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7335 cgtttggttcttgagcttctttttggcagcctttaaagcccaatccatcgtttaaattca 7394
Query: 269 aagccaccacgggagctatccatgtaaagctgtgaatttctgagctgggtagaaattggt 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7395 aagccaccacgggagctatccatgtaaagctgtgaatttctgagctgggtagaaattggt 7454
Query: 329 cgagtctttacccacaaatatagaagtactggggataaaagcgtctaaacttttttgtta 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7455 cgagtctttacccacaaatatagaagtactggggataaaagcgtctaaacttttttgtta 7514
Query: 389 ttattttggttttgattcattatataaaacgacttcaattatacaaaccaaaacaacgca 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7515 ttattttggttttgattcattatataaaacgacttcaattatacaaaccaaaacaacgca 7574
Query: 449 agttttgtcagagtacatgttgctgtgcttgataccgattgacctacaccgatattttgg 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7575 agttttgtcagagtacatgttgctgtgcttgataccgattgacctacaccgatattttgg 7634
Query: 509 ttcggtaactaatcaaacatgaggatcaaccagttaggattaaggaagtttgatactatc 568
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 7635 ttcggtaactaatcaaacatgaggatcaaccagttaggataaagaaagtttgatactatc 7694
Query: 569 cacgtgattatcacgtggatcatacggaaagagattaaacctattttgacaatgggtaga 628
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 7695 cacgtgaatatcacgtggatcatacggaaagagattaaacctattttgacaatggtaaga 7754
Query: 629 atttgattacttccagatttgatgaaagcatgatatttatgtaggaaag-ttactcaaaa 687
|||||| |||||| |||| |||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 7755 atttgaatacttcaagatatgatgaaagcatgatatttatgtaggaaagtttactcagaa 7814
Query: 688 g-gatttgaaactgtttatcaggacaccagttt-cgattcaaa 728
| |||||||||||||||||||||||| |||||| |||||||||
Sbjct: 7815 gtgatttgaaactgtttatcaggacaacagtttccgattcaaa 7857
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7354
Number of Sequences: 1807
Number of extensions: 7354
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)