BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZF03RM1.SCF screened BAC_end
(953 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig675 989 0.0
>3x_Contig675
Length = 2979
Score = 989 bits (499), Expect = 0.0
Identities = 538/547 (98%), Gaps = 3/547 (0%)
Strand = Plus / Minus
Query: 47 cttgcaacaatgtattaaggttagcctttgtagtatttcgggctt-agcaaacgcttttt 105
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1672 cttgcaacaatgtattaaggttagcctttgtagtatttcgggcttcagcaaacgcttttt 1613
Query: 106 tcatcagaaatgaatcaggatccatcatcataggtaaatgtttagccatgtagaaaatca 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1612 tcatcagaaatgaatcaggatccatcatcataggtaaatgtttagccatgtagaaaatca 1553
Query: 166 catcaataccttttctttttcgaggaaaatgcagtcgtttctttttaatcaagatcagat 225
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1552 catcaataccttttctttttcgaggaaaatgcagtcgtttctttttaatcaagatcagag 1493
Query: 226 ttgttccgggcggagaaacttgccaaggtgacgtacgtacctcaatatttctttcggaga 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1492 ttgttccgggcggagaaacttgccaaggtgacgtacgtacctcaatatttctttcggaga 1433
Query: 286 aacaacaagatcagaatgatcacgtgaccaattgaccaaaagatgtggctcattcatagg 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1432 aacaacaagatcagaatgatcacgtgaccaattgaccaaaagatgtggctcattcatagg 1373
Query: 346 aataaaaaccgtacgctctacactgtacactaccacgcgtcttcgctcactccatggtat 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1372 aataaaaaccgtacgctctacactgtacactaccacgcgtcttcgctcactccatggtat 1313
Query: 406 acaagggtgttgctgtcataccgtctcggctgttatgcgaaggtaacgaaatattttttt 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1312 acaagggtgttgctgtcataccgtctcggctgttatgcgaaggtaacgaaatattttttt 1253
Query: 466 tttttctttcgaaaaaaacgtcgactcaagccatcatcacatactcgtcccagatgcaac 525
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 1252 tttttctttcgaaaaaaacgtcgactcaagccatcatcacaaactcgtcccagaagcaac 1193
Query: 526 gtacgactcgcatatttgctgaatctgggcaatcgcataccgt-atttcattag-attag 583
|||||||||||||||||||||||||||| ||||||||||||| || ||||||| |||||
Sbjct: 1192 gtacgactcgcatatttgctgaatctggcaaatcgcataccgtaatatcattagaattag 1133
Query: 584 ccccaag 590
|||||||
Sbjct: 1132 ccccaag 1126
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 23,798
Number of Sequences: 1807
Number of extensions: 23798
Number of successful extensions: 2371
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)