BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC40ZF04FM1.SCF screened BAC_end
         (956 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1567                                                        1187   0.0  

>3x_Contig1567 
          Length = 11673

 Score = 1187 bits (599), Expect = 0.0
 Identities = 679/699 (97%), Gaps = 5/699 (0%)
 Strand = Plus / Plus

                                                                        
Query: 88   accaaatatgcacacacacactgattcaaggcacgaggggtgcagcaccaacgtggttac 147
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4777 accaaatatgcacacacacactgattcaaggcacgaggggtgcagcaccaacgtggttac 4836

                                                                        
Query: 148  gaacgtgtgattagcgtggtggcaataagataatatattatgggtgtatttgaatcatgg 207
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4837 gaacgtgtgattagcgtggtggcaataagataatatattatgggtgtatttgaatcatgg 4896

                                                                        
Query: 208  aaggacactgcgtaaaggtatcgcatgcgatgcctttttgcaatgtctgttttacgtaat 267
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4897 aaggacactgcgtaaaggtatcgcatgcgatgcctttttgcaatgtctgttttacgtaat 4956

                                                                        
Query: 268  atttcgatacactttagtatcagatttcagggtgtgatagtgccctaaaacggcaagcaa 327
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4957 atttcgatacactttagtatcagatttcagggtgtgatagtgccctaaaacggcaagcaa 5016

                                                                        
Query: 328  ctgacagcagccactaatcagatttttatcggatcaacgaaccaagcattcgggctgtgc 387
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5017 ctgacagcagccactaatcagatttttatcggatcaacgaaccaagcattcgggctgtgc 5076

                                                                        
Query: 388  attgtcttggtcgaagtgatggccattaggcatacaataactggcagtgccaaggatcgg 447
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5077 attgtcttggtcgaagtgatggccattaggcatacaataactggcagtgccaaggatcgg 5136

                                                                        
Query: 448  ctgtaacggaattttgaattccggccgacaggaagctctggtagggtaacatatcaaatg 507
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5137 ctgtaacggaattttgaattccggccgacaggaagctctggtagggtaacatatcaaatg 5196

                                                                        
Query: 508  aaatgagatgaaaaggatggtatataatcacgtgcacaggactgtggcacatacacccat 567
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 5197 aaatgagatgaaaaggatggtatataatcacgtgcacaggactgtggcacagacacccat 5256

                                                                        
Query: 568  acaccagttatattaagtttaacactggatgaaatgtatattttccacattaggaaatag 627
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5257 acaccagttatattaagtttaacactggatgaaatgtatattttccacattaggaaatag 5316

                                                                        
Query: 628  cacgtggtattaaatcgatgtctttttcctttcacgagccagattttttaaacgagatgg 687
            |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 5317 cacgtggtataaaatcgatgtcttttccctttcacgagccagattttttaaacgagatgg 5376

                                                                        
Query: 688  attgct-acggatattggctggac-gacccacaacatgggcggatttccccccagaagct 745
            | |||| ||||| ||||||||||| ||| |||| || |||||||  ||| | ||| ||| 
Sbjct: 5377 a-tgctaacggagattggctggacggacgcacagcaagggcgga-gtccgcgcaggagc- 5433

                                                   
Query: 746  taggtttaatccagtgttttcctaagcagggatggggca 784
            |||| ||| || |||||||||||| ||||||||||||||
Sbjct: 5434 taggcttagtcgagtgttttcctaggcagggatggggca 5472


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6432
Number of Sequences: 1807
Number of extensions: 6432
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)