BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC40ZF04FM1.SCF screened BAC_end (956 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1567 1187 0.0 >3x_Contig1567 Length = 11673 Score = 1187 bits (599), Expect = 0.0 Identities = 679/699 (97%), Gaps = 5/699 (0%) Strand = Plus / Plus Query: 88 accaaatatgcacacacacactgattcaaggcacgaggggtgcagcaccaacgtggttac 147 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4777 accaaatatgcacacacacactgattcaaggcacgaggggtgcagcaccaacgtggttac 4836 Query: 148 gaacgtgtgattagcgtggtggcaataagataatatattatgggtgtatttgaatcatgg 207 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4837 gaacgtgtgattagcgtggtggcaataagataatatattatgggtgtatttgaatcatgg 4896 Query: 208 aaggacactgcgtaaaggtatcgcatgcgatgcctttttgcaatgtctgttttacgtaat 267 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4897 aaggacactgcgtaaaggtatcgcatgcgatgcctttttgcaatgtctgttttacgtaat 4956 Query: 268 atttcgatacactttagtatcagatttcagggtgtgatagtgccctaaaacggcaagcaa 327 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4957 atttcgatacactttagtatcagatttcagggtgtgatagtgccctaaaacggcaagcaa 5016 Query: 328 ctgacagcagccactaatcagatttttatcggatcaacgaaccaagcattcgggctgtgc 387 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5017 ctgacagcagccactaatcagatttttatcggatcaacgaaccaagcattcgggctgtgc 5076 Query: 388 attgtcttggtcgaagtgatggccattaggcatacaataactggcagtgccaaggatcgg 447 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5077 attgtcttggtcgaagtgatggccattaggcatacaataactggcagtgccaaggatcgg 5136 Query: 448 ctgtaacggaattttgaattccggccgacaggaagctctggtagggtaacatatcaaatg 507 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5137 ctgtaacggaattttgaattccggccgacaggaagctctggtagggtaacatatcaaatg 5196 Query: 508 aaatgagatgaaaaggatggtatataatcacgtgcacaggactgtggcacatacacccat 567 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 5197 aaatgagatgaaaaggatggtatataatcacgtgcacaggactgtggcacagacacccat 5256 Query: 568 acaccagttatattaagtttaacactggatgaaatgtatattttccacattaggaaatag 627 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5257 acaccagttatattaagtttaacactggatgaaatgtatattttccacattaggaaatag 5316 Query: 628 cacgtggtattaaatcgatgtctttttcctttcacgagccagattttttaaacgagatgg 687 |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 5317 cacgtggtataaaatcgatgtcttttccctttcacgagccagattttttaaacgagatgg 5376 Query: 688 attgct-acggatattggctggac-gacccacaacatgggcggatttccccccagaagct 745 | |||| ||||| ||||||||||| ||| |||| || ||||||| ||| | ||| ||| Sbjct: 5377 a-tgctaacggagattggctggacggacgcacagcaagggcgga-gtccgcgcaggagc- 5433 Query: 746 taggtttaatccagtgttttcctaagcagggatggggca 784 |||| ||| || |||||||||||| |||||||||||||| Sbjct: 5434 taggcttagtcgagtgttttcctaggcagggatggggca 5472 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6432 Number of Sequences: 1807 Number of extensions: 6432 Number of successful extensions: 44 Number of sequences better than 1.0e-20: 1 length of query: 956 length of database: 10,358,551 effective HSP length: 16 effective length of query: 940 effective length of database: 10,329,639 effective search space: 9709860660 effective search space used: 9709860660 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)