BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZF04RM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1107 1211 0.0
>3x_Contig1107
Length = 6096
Score = 1211 bits (611), Expect = 0.0
Identities = 654/667 (98%), Gaps = 1/667 (0%)
Strand = Plus / Plus
Query: 49 aattctatcaccagatgtaccagaaacggtgaacacaactcctgcagttagaaaacgctc 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1880 aattctatcaccagatgtaccagaaacggtgaacacaactcctgcagttagaaaacgctc 1939
Query: 109 tgagtccggcgtcctcggacctactgctcctaaaccaaaatcaccagttccacaacaaga 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1940 tgagtccggcgtcctcggacctactgctcctaaaccaaaatcaccagttccacaacaaga 1999
Query: 169 tgccaatacagatcctccaagagtattgtccttgcagtctcagttaagttcagagacgca 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2000 tgccaatacagatcctccaagagtattgtccttgcagtctcagttaagttcagagacgca 2059
Query: 229 aagtgacactgatcctgatgttgggtctgtagaagttgttcagtatagaacttcgccgac 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2060 aagtgacactgatcctgatgttgggtctgtagaagttgttcagtatagaacttcgccgac 2119
Query: 289 aaaaggtgatgtaaaaaaatacgctgttggaaccaacttgagatcctcatcggactatga 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2120 aaaaggtgatgtaaaaaaatacgctgttggaaccaacttgagatcctcatcggactatga 2179
Query: 349 aaattattcaccatctatcatgcataacacaggtgctgagccttcgcctaaacctaactc 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2180 aaattattcaccatctatcatgcataacacaggtgctgagccttcgcctaaacctaactc 2239
Query: 409 cttgtcagatacgacgcacttcgataaatccatagatgtaataactgacgctgataaaag 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2240 cttgtcagatacgacgcacttcgataaatccatagatgtaataactgacgctgataaaag 2299
Query: 469 ccctgtcactttaagtgaacctgctcgtattgtttctgaaaagaatgaaaacaacattct 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2300 ccctgtcactttaagtgaacctgctcgtattgtttctgaaaagaatgaaaacaacattct 2359
Query: 529 gaaagaatttactgaagagttgaagcaattgaaggaggatactgtgaccagtgctactag 588
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2360 gaaagaattacttgaagagttgaagcaattgaaggaggatactgtgaccagtgctactag 2419
Query: 589 tgcatacagcagaataatgggattgggactagaaaatacagaattaaaagcattgaacca 648
|||| ||||||||||||||| ||||| ||||||||||||||||||||| |||||||||
Sbjct: 2420 tgcaaacagcagaataatggaattggaactagaaaatacagaattaaagcaattgaacca 2479
Query: 649 attaagtcactttgatgacatgattaatgcaccaaacagaagttattgccaagctacaat 708
|||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 2480 attaagtcacttgaatgacatgattaa-gcaccaaacagaagtaattgccaagctacaat 2538
Query: 709 cagaagt 715
|||||||
Sbjct: 2539 cagaagt 2545
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7237
Number of Sequences: 1807
Number of extensions: 7237
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)