BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZF05FM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1320 1021 0.0
>3x_Contig1320
Length = 7350
Score = 1021 bits (515), Expect = 0.0
Identities = 594/615 (96%), Gaps = 4/615 (0%)
Strand = Plus / Minus
Query: 86 gcgaccatgaacaactttgctcagttatccgtatgtttgtttttttcttttatgttttgg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2587 gcgaccatgaacaactttgctcagttatccgtatgtttgtttttttcttttatgttttgg 2528
Query: 146 cgtaagttttgatcacacgttaaacatttttgtttaagggtttaagacaatgaaataata 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2527 cgtaagttttgatcacacgttaaacatttttgtttaagggtttaagacaatgaaataata 2468
Query: 206 taattcattgtatgttattttaagttggcatattcagcatactaacagttttcatcttga 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2467 taattcattgtatgttattttaagttggcatattcagcatactaacagttttcatcttga 2408
Query: 266 aatggaatcttctctctttagcaaatctccagttttgcgcataacttgtctgtggaacgc 325
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2407 aatggaatcttctctctttagcaaatctccagttttgcgcagaacttgtctgtggaacgc 2348
Query: 326 attaagagcgaatttggttctctacaaaatagattggcgtcggtacgtccaccacaggaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2347 attaagagcgaatttggttctctacaaaatagattggcgtcggtacgtccaccacaggaa 2288
Query: 386 ttcttcgacttcaagagaatttccaaacctcaaaattttggtgaagttcaatcgagagtg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2287 ttcttcgacttcaagagaatttccaaacctcaaaattttggtgaagttcaatcgagagtg 2228
Query: 446 ggctacaacttgggctattttttaaccaactatgtcctgattattagtgctctaagtatt 505
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 2227 ggctacaacttgggctatttttcaaccaactatgtcctgattattagtgctctaagtatt 2168
Query: 506 tacacgttgttaaccaactttttgttgttgacggtgattgttttcgtgggtctttgggac 565
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 2167 tacacgttgttaaccaactttttgttgttgacggtgattgttttcgt-ggtctttgggac 2109
Query: 566 tatgggtattaatcagctaaacggtgcggattttggtcacttcatttgggtctttttaga 625
|||||||||||| |||||||||||||||| |||||||||| ||||||| |||||| |||
Sbjct: 2108 tatgggtattaacaagctaaacggtgcgga-tttggtcactccatttggttcttttaaga 2050
Query: 626 cttcttaactttacactggtctacttttgggttgcttgaccttttggggttcctaccttt 685
||||| | |||||||||||||||| | || |||||| ||| ||||||||||||| |||
Sbjct: 2049 cttctcagctttacactggtctac-tatgtgttgctgtacc-tttggggttcctagcttc 1992
Query: 686 tcccatttttacttt 700
|||||| | ||||||
Sbjct: 1991 tcccatctctacttt 1977
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,636
Number of Sequences: 1807
Number of extensions: 16636
Number of successful extensions: 157
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)