BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZF05RM1.SCF screened BAC_end
(903 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1600 1160 0.0
>3x_Contig1600
Length = 9359
Score = 1160 bits (585), Expect = 0.0
Identities = 677/701 (96%), Gaps = 6/701 (0%)
Strand = Plus / Plus
Query: 49 gcaaaaggatcccactttatttcatgtctcttgggatgcttatttcaagaacatgggtaa 108
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 5831 gcaaaaggatcccacttcagttcatgtctcttgggatgcttatttcaagaacatgggtaa 5890
Query: 109 tctgaatattccagcctcttctgccttcaccgccccaccaacattaattccaataccaac 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5891 tctgaatattccagcctcttctgccttcaccgccccaccaacattaattccaataccaac 5950
Query: 169 gggtcctggtgtgcctcaagatatattgatagggggttcgttaagtggctttgaccaaga 228
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 5951 gggtcctggtgtgcctcaagatatattgatagggggttcgttaagtggcgttgaccaaga 6010
Query: 229 catcacaacacatttaaaagtgcaacttttgtgccgtgcttaccaagtaagaggtcacca 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6011 catcacaacacatttaaaagtgcaacttttgtgccgtgcttaccaagtaagaggtcacca 6070
Query: 289 gaaggctcatattgatccgttacaaatttcatttggtgatgataagagtaaacctctacc 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6071 gaaggctcatattgatccgttacaaatttcatttggtgatgataagagtaaacctctacc 6130
Query: 349 tcgtgagttgactttggaacactatggattcacagaaaaggatctagatagagatatcac 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6131 tcgtgagttgactttggaacactatggattcacagaaaaggatctagatagagatatcac 6190
Query: 409 attgggacccggtatcttgccacgtttctctcgtgatggtagaaagaccatgaaactaag 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6191 attgggacccggtatcttgccacgtttctctcgtgatggtagaaagaccatgaaactaag 6250
Query: 469 agaaattattgctgctttggaaaaattgtactgttctggatacggtatcgaatacattca 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6251 agaaattattgctgctttggaaaaattgtactgttctggatacggtatcgaatacattca 6310
Query: 529 tatcccttc-aaagatcaatgtgaatggttaagagaaagaatttgaatcccacaacctta 587
||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 6311 tatcccttcaaaagaacaatgtgaatggttaagagaaagaattgaaatcccacaacctta 6370
Query: 588 ntattataccgtagaccanaagagacaaattttggatagactgacttgggctacttcttt 647
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 6371 taattataccgtagaccaaaagagacaaattttggatagactgacttgggctacttcttt 6430
Query: 648 tgaaacttttctatctactaaattcccctaaccat-agaaattc-gnttgggaggtttan 705
||||||||| ||||||||||||| ||||||| || ||| |||| | |||| |||||||
Sbjct: 6431 tgaaactttcttatctactaaatt-ccctaacgataagagattcggtttggaaggtttag 6489
Query: 706 aaggggttggttcctggtatcaagacc-tgatggaccgttc 745
|||| ||| |||||||||||||||||| |||| ||||||||
Sbjct: 6490 aaggtgtt-gttcctggtatcaagaccttgattgaccgttc 6529
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6243
Number of Sequences: 1807
Number of extensions: 6243
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 903
length of database: 10,358,551
effective HSP length: 16
effective length of query: 887
effective length of database: 10,329,639
effective search space: 9162389793
effective search space used: 9162389793
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)