BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZF06FM1.SCF screened BAC_end
(968 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1754 1213 0.0
>3x_Contig1754
Length = 26052
Score = 1213 bits (612), Expect = 0.0
Identities = 705/732 (96%), Gaps = 3/732 (0%)
Strand = Plus / Plus
Query: 86 cggtagcattgaagaaagagcaaaggtattaaattccttcattgatacagaattgggcaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11388 cggtagcattgaagaaagagcaaaggtattaaattccttcattgatacagaattgggcaa 11447
Query: 146 agtcaaaaggactttatccaaaggagacgtatacaacactaatgaggttaactcgaaatc 205
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11448 agtcaaaaggactttagccaaaggagacgtatacaacactaatgaggttaactcgaaatc 11507
Query: 206 tttcaaaaaggaagacaagattaaggtcaaccttatagcacattctatgggtggattgga 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11508 tttcaaaaaggaagacaagattaaggtcaaccttatagcacattctatgggtggattgga 11567
Query: 266 ttgtagatacctcatctcccatataccgaataaaaatttcgaagtttgcagcctaactac 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11568 ttgtagatacctcatctcccatataccgaataaaaatttcgaagtttgcagcctaactac 11627
Query: 326 gatttctacgccacaccatggctctgaaatggctgattatgtggtaggactattcagtga 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11628 gatttctacgccacaccatggctctgaaatggctgattatgtggtaggactattcagtga 11687
Query: 386 tatgacacaaacttttgatgtcaatactaaaaagaagctgttacctccagctttttacca 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11688 tatgacacaaacttttgatgtcaatactaaaaagaagctgttacctccagctttttacca 11747
Query: 446 attgacgacaacctattgctcacatttcaataaaataacgccggatgaccctagcgtagc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11748 attgacgacaacctattgctcacatttcaataaaataacgccggatgaccctagcgtagc 11807
Query: 506 ttacttcagttatggcgcctgtttcaaaccgcgatggtataacatgttttatatgtcatg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11808 ttacttcagttatggcgcctgtttcaaaccgcgatggtataacatgttttatatgtcatg 11867
Query: 566 gggcgtgatatcaaatttatctggcggagtacctatcgatgggatggtaagcatacaaag 625
| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 11868 gtgcgtgatatcaaatttatctggcggagtacctaacgatggaatggtaagcatacaaag 11927
Query: 626 tgcaagatggggcccgtttttggggacgcttgagaacgtcgatcactctgattt-attaa 684
|||||||||||||| | |||||||||||||||||||||||||||||||||||| || ||
Sbjct: 11928 tgcaagatggggccgttatttggggacgcttgagaacgtcgatcactctgatttaataaa 11987
Query: 685 ctggaaaaatcgattacagaaaggatttaaatttcgtctgcaaggtaccttggaagatac 744
||||||||||||||||||||||| ||| ||| |||||||||||||| ||| ||||| ||
Sbjct: 11988 ctggaaaaatcgattacagaaagagtttcaatatcgtctgcaaggta-ctttgaagaaac 12046
Query: 745 cccaaaaccctgtttttgaacttttggctttttaccttaaagtc-caaaaaatcttgcca 803
| |||||||||| | |||| ||||| |||||||||||||||| || | || |||||||
Sbjct: 12047 ctcaaaaccctgatattgacattttgcatttttaccttaaagtcacagagaaccttgcca 12106
Query: 804 acttaggatttt 815
||||||||||||
Sbjct: 12107 acttaggatttt 12118
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8251
Number of Sequences: 1807
Number of extensions: 8251
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 968
length of database: 10,358,551
effective HSP length: 16
effective length of query: 952
effective length of database: 10,329,639
effective search space: 9833816328
effective search space used: 9833816328
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)