BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZF06RM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1281 1312 0.0
>3x_Contig1281
Length = 7825
Score = 1312 bits (662), Expect = 0.0
Identities = 755/780 (96%), Gaps = 5/780 (0%)
Strand = Plus / Plus
Query: 48 gagatatccctgttaagagatagcggaaacgatatgaacaaagtcaccaatgtgataatg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3982 gagatatccctgttaagagatagcggaaacgatatgaacaaagtcaccaatgtgataatg 4041
Query: 108 acattccgatgaaaaagatctgtatgagaagggaaaaaggcgctcaaaacatgaggtatt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4042 acattccgatgaaaaagatctgtatgagaagggaaaaaggcgctcaaaacatgaggtatt 4101
Query: 168 gaatctccaatgataatgcaaaacccaacgcaaccaccaaatgcaaataggccgttggat 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4102 gaatctccaatgataatgcaaaacccaacgcaaccaccaaatgcaaataggccgttggat 4161
Query: 228 actaaaatcaaaagtcctccccattgacccattgctgtttctacagatgcttgataagta 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4162 actaaaatcaaaagtcctccccattgacccattgctgtttctacagatgcttgataagta 4221
Query: 288 ctcttaccggttaatttcaaattgatcacaatcagacgaatggtccaatcaaccagtatg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4222 ctcttaccggttaatttcaaattgatcacaatcagacgaatggtccaatcaaccagtatg 4281
Query: 348 gacattaatatggtcgcaaataatccgccgatgattccgcaatttttcatcgcaaaaggt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4282 gacattaatatggtcgcaaataatccgccgatgattccgcaatttttcatcgcaaaaggt 4341
Query: 408 tgccctatcactcctgatcctaaaatactattcgccatgttcatgaaagccatgtacctg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4342 tgccctatcactcctgatcctaaaatactattcgccatgttcatgaaagccatgtacctg 4401
Query: 468 ttagattttgcctcattagataaatagatgtcatctgttaatgggtcttcttcattaaca 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4402 ttagattttgcctcattagataaatagatgtcatctgttaatgggtcttcttcattaaca 4461
Query: 528 ttaaaaatgttntggtcaactgcgctgtcagctgtcttcgcggtgtcatcaaatgacgtt 587
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4462 ttaaaaatgttttggtcaactgcgctgtcagctgtcttcgcggtgtcatcaaatgacgtt 4521
Query: 588 aaactcagttcatacggatttggttcattctttcga-tgtttatcagacaaagctagttt 646
|| ||||||| ||||||||||||||||| ||||| ||||||||||||| |||||||||
Sbjct: 4522 aactccagttcaaacggatttggttcattc-ttcgattgtttatcagacagagctagttt 4580
Query: 647 tgcatactttttatcagcggctatctgcatctgnattaattatatttcaccaagtatgcc 706
||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||| |||
Sbjct: 4581 tgcatactttttatcagcggctatctgcatctgtattaattataattcacaaagtaggcc 4640
Query: 707 attaacggttcaactatcgtgcgcctcgtttgctactacaaccttcttacagccttattg 766
|| | ||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 4641 ataagcggttcaactatcgtgcgctccgtttgctactacaaccttcttacagccatattg 4700
Query: 767 gtttatctaa-gcaag-agaaatacttgcgat-tattaatttggagcttaatcttttggg 823
||||||||| ||||| |||||||||||| || ||| ||||||| ||||| |||||||||
Sbjct: 4701 ttttatctaaggcaagaagaaatacttgcaatatataaatttggtgcttagtcttttggg 4760
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6464
Number of Sequences: 1807
Number of extensions: 6464
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)